result

Gene information

Detail information of g132328

Location

Gene	Chr	Start	End	Strand
g132328	CHR6	48914099	48917898	+

Sequences

CDS

>g132328.t1
ATGCCTAGCTCTTATGGGTTGCACGACGGTAAGCCATCTTCTTCTATTGATAGGGTTGAAGGAGGAGTCCAAGAAATACATCTTTTGTTTCTTCTGGAAAGAAGAGAAAACTTCCCTCTTCAAAATTCAAATTGCTTCATCCTTTATTATTCGTTGTTTTCAATTATTAACTACTTGCGTGCCATGGTTCTTGTTCCAATCACTTCGAATGAAGTTATACTTCCTAAACAGAGACACAAGGCTTTCTTGAGTTTTAGAGGGAGAAAGACTAAAAGCGCAAAACATGAGCTCAGTGACAATGAAAACATTGACAATTCCGATCAAAGCTCGCCACGAGGAGTGTTCGAAACTTCAGTATCAAGCACCGATTCAGATAGTGGAAGCAGCACTGAAGTTTCATCAATAGAGAGGTCAAGTAGTTTAAGATGGAGAAATGTTTTTGGAGGATTCTTATCTAGGCAAAATAAGTCGATGAGGCGGCTTAGTACATTTCCTCCTATAATTAGAAGTTCAATGGAGATTGAAGTGCCTCAAGAAGAAATGTTGAAGGGGAGACATTCATGGAGAAGCTTCGATTATCAAGAGCTTGTAGTTGCTACTAATAATTTCAGTTCAGATAAGCTAATTGGAAAAGGAGGACATGCCGAGGTATACAAGGGTTGTCTTCCTGATGGGCAACTGGTGGCAGTGAAAAAGCTAACGAAAAAGCAAACTGAAGATGAAAGAATCAGAGATTTTCTATCAGAGCTTGGTATTATCGGTCATGTTAACCATCCGAATGCTGCACAGTTATTAGGATTTAGTGTCGAAGGAGGATTATATCTTGTTCTACAATATTCACCTCATGGAAGCCTCGCTTCTGTGCTCCATGGTTCAAAGGATAGACTAGAGTGGAACATCAGATTCAAAATTGCATTAGGCATCGCAGAAGGACTATTATATCTTCATGAGGGATGTCAAAGACGAATTATTCATAGAGATATCAAAGCATCTAACATTCTTCTCACAAATGACTATCAGCCTCAGATCTCTGACTTTGGGCTTGCAAAATGGCTTCCCGATAACTGGAACCATCATATTGTTTCTCCTATTGAAGGAACTTTCGGTTATTTGGCTCCAGAATATTTTATGCATGGAGTGGTCAATGAGAAAATCGATGTCTTTGCTTATGGTGTTTTGCTGCTTGAGTTAATTACTGGACGTCGAGCTGTCGACTCTTGTAGGAAGAGCCTTGTAATCTGGGCAAAGCCATTACTTGATTCAAACAACATGAAAGAACTTATCGATCAGTCTTTGGCTGATTCTTATGACTCTGATGAGATGAAGCGTGCGGTTTCAGCTGCTTCAATGTGTATTCACCACCTCTCTACAGCACGACCTACTATGAATTCTGTTGTTAGTCTTCTGAGAGGCGAAAAAGAATCGTTGGACATGATTGGGAGAGTGAAGAAGCTAAATATGTCAAAACCAACACCTTTGTTTGATGCAGGGGACATGGAAGACTACACTTGTTCAAGATACCTCAATGATTTAAACAGACACAAGCAACTTGCAATGGAACAGTGA

Protein

Gene

>g132328.t1
ATGCCTAGCTCTTATGGGTTGCACGACGGTAAGCCATCTTCTTCTATTGATAGGGTTGAAGGAGGAGGTATTTGATACATTTTCATGTTTTTATTAACAATAGTAACAAAATAGTTCTTATATTGAATCAAAATTTCCAATTATGCTTTCTGATTTACTAATTATGAGTGGTTGGTAATAGTTTGCTATTTGTTGTTATCCTCATGCACAATTAATCCAATATCCAACTATGATTTTAAGCACACATGATATAACACTATTTAATTGATAGATTTAAATGCACCTTAAAAACGAACATGGTTAGAATGTTTGTTAGATTCAGCTCTTTGTGTGTAGTGGATGGAATGATACCCGATCCAATTTAGTCCCGAATCAACCATAATGGGACCCTCTAATCTTACACAAAGTGTTTGACCGCAACTTTTGAACAATTTAAATTCTTTGAAATCCACATATGAACCAACACAGTCACTGTGTGTCCCATGCTATAAAGGCTTTGCTCTTTCTTCATCTCTTCTTTCGAGAATAAACCCAAGTCCAAGAAATACATCTTTTGTTTCTTCTGGAAAGAAGAGAAAACTTCCCTCTTCAAAATTCAAATTGCTTCATCCTTTATTATTCGTTGTTTTCAATTATTAACTACTTGCGTGCCATGGTTCTTGTTCCAATCACTTCGAATGAAGGTAAAATATTTGTTAATAAACCTGTAATCTCATGCTTTATGTTGCTGGTTGGACTTAAAAATAAGCATTTTTGACAAAACCCGTGTGCTAGCTTTTGTAATGAAATTAATTGATTATTTTCTTGCATCTCCAGTTATACTTCCTAAACAGAGACACAAGGCTTTCTTGAGTTTTAGAGGTAATTTTTATAAACTTCTAACTTTAGTTTTCATTTTTTTAAAAAAAAATCTTTCTCTAGAAAAATGGAAATTTAATTATTGTGAGAAGACGATAAACAGTAACATAGCCCACTTAATTTCATTATAACTTCTGCACAATTATAGAGCAGGCACTTGATTGGAGGATGCCATGTATGTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCATTTAATAGTTTTTTCCCCTCTCTCCCCATGTTAGAACAATGATACATGGAATTAATTGTTTTCTTATTACAAATTCATATAAGGAAATATATTCCAGAAAGGAGAAATAATAAAAATGTAATCTTTAAACAATTTGAACCATAACTTCTTAATGTGAAACAAAACAATGAAATATGAAGTTTGGTGAAATTACCAGTTACTAATTAGTGATAAGTACACATCAAAATCAATTTTTTTTTACTGGTAATGAATCATTGTTCTAACATAAATACAGGGAGAAAGACTAAAAGCGCAAAACATGAGCTCAGTGACAATGAAAACATTGACAATTCCGATCAAAGCTCGCCACGAGGAGTGTTCGAAACTTCAGTATCAAGCACCGATTCAGATAGTGGAAGCAGCACTGAAGTTTCATCAATAGAGAGGTCAAGTAGTTTAAGATGGAGAAATGTTTTTGGAGGATTCTTATCTAGGCAAAATAAGTCGATGAGGCGGCTTAGTACATTTCCTCCTATAATTAGAAGTTCAATGGAGATTGAAGTGCCTCAAGAAGAAATGTTGAAGGGGAGACATTCATGGAGAAGCTTCGATTATCAAGAGCTTGTAGTTGCTACTAATAATTTCAGTTCAGGTGAAATTTTTTGTCATATTTTTCACTTATAGGTCGATTAAGATACACTATGGGTGCGTTTGCATGAATTTTTTGCTCCTTTCACGTTCATCTGACATGGGGTCCACCAAAGAGCTCGTTTGAGCTAACCATTGGAAAACAAATGATTGGATTCAGACGGGTCAGATGCATCTGACACGTTTGACTTTCTTGCCCCTGTCGTTCTCTAATCCATGCCCCTTTCATTTGCTTCTTTCGTACACAAGAACGCGTTCTTTTTCGCGAATCATTCCCCTTTCGCGTCGCACAAGAATGCACCCTAAGTCTTTACATTGTTTCTCCAGTCTAGTAAAACAGTGTAAAAAAATAGATGTGTTGAAAAATTAAATACACCAAGTCTTACATTGCACATATGTATAATATTCATAAAAATTTCCATACATGTATAATAATTGTGACCATACTGCAATATATTAGATAAGCTAATTGGAAAAGGAGGACATGCCGAGGTATACAAGGGTTGTCTTCCTGATGGGCAACTGGTGGCAGTGAAAAAGCTAACGAAAAAGCAAACTGAAGATGAAAGAATCAGAGATTTTCTATCAGAGCTTGGTATTATCGGTCATGTTAACCATCCGAATGCTGCACAGTTATTAGGATTTAGTGTCGAAGGAGGATTATATCTTGTTCTACAATATTCACCTCATGGAAGCCTCGCTTCTGTGCTCCATGGTATATATTTCATTCTCATGTGCATAAATTTCATGACTATGCAAAAATTCTGTTGTCATCTCTATAAGCTCATCTATAATAGAATGATCAATCAAAACAAACAGTATATGTACTCAGAAAATATAAATATGAATCAACCTTTGAGCTTTTGCAGGTTCAAAGGATAGACTAGAGTGGAACATCAGATTCAAAATTGCATTAGGCATCGCAGAAGGACTATTATATCTTCATGAGGGATGTCAAAGACGAATTATTCATAGAGATATCAAAGCATCTAACATTCTTCTCACAAATGACTATCAGCCTCAGGTAACATCCTTTGCTTTGTGTATATTCTGAAACATCGGATTAACCAATATGTGCACGTTTTTCGTAGACTAATTAAATGCATTTTTGTTTGTTATGTCAATGATCCAAAACACATTAAATCTATCAATGCAGATCTCTGACTTTGGGCTTGCAAAATGGCTTCCCGATAACTGGAACCATCATATTGTTTCTCCTATTGAAGGAACTTTCGGGTAGAAACTGTAGTTTTTTTTTTCTATAGGTAAATTCAGTTATTATGCATATGCTTATGTTTATAGTATGCATAATGTGCAGTTATTTGGCTCCAGAATATTTTATGCATGGAGTGGTCAATGAGAAAATCGATGTCTTTGCTTATGGTGTTTTGCTGCTTGAGTTAATTACTGGACGTCGAGCTGTCGACTCTTGTAGGAAGAGCCTTGTAATCTGGGTACACACATAAATTAATCTTTGTAGCAAAATAATACATTAGTGCATATAATTTCATACTAGTTATTGTTAGAGAACCGCATATTGTCACAATATCAGTTGGTAATGTGAATGGTGATCTCTTAGTATTTATTTAGAATTTTGTTTTATAAACTGCCCAATGCAAGACTGATCATAACAGCTATGACCAACTGTTTTTATAAATACACAGGCAAAGCCATTACTTGATTCAAACAACATGAAAGAACTTATCGATCAGTCTTTGGCTGATTCTTATGACTCTGATGAGATGAAGCGTGCGGTTTCAGCTGCTTCAATGTGTATTCACCACCTCTCTACAGCACGACCTACTATGAATTCTGTAAGGGCGACAGTTTATTTTAAAAGAAGGAAAAAAAATGACTGCCTATATAACAATGATAATCCAGTTATCTTTCATATGAATGAGTTGAATTTTATTTGTATAAATGTAGGTTGTTAGTCTTCTGAGAGGCGAAAAAGAATCGTTGGACATGATTGGGAGAGTGAAGAAGCTAAATATGTCAAAACCAACACCTTTGTTTGATGCAGGGGACATGGAAGACTACACTTGTTCAAGATACCTCAATGATTTAAACAGACACAAGCAACTTGCAATGGAACAGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020244255.1	5.1e-180	receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2
Swissprot	Q8H1D6.1	6.7e-121	Protein ROP BINDING PROTEIN KINASES 1
trEMBL	A0A5P1EM26	1.3e-174	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G65530.1	58.25	2e-127	452		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g132328	AT5G65530.1	388	132	6	152	520	80	456	58.25	2e-127	452
g132328	AT5G10520.1	397	155	6	141	520	79	467	54.66	2e-124	443
g132328	AT5G18910.1	395	164	6	143	519	117	506	52.66	4e-118	422

Ortholog group

Species	Genes
Allium cepa	g132328.t1
Allium fistulosum	AfisC6G05267
Allium sativum	Asa0G00005.1
Arabidopsis thaliana	AT5G10520.1; AT5G65530.1
Oryza sativa	LOC_Os06g45350.1; LOC_Os06g45350.2; LOC_Os06g45350.5

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	204	466	146.5	8.1e-43

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0002376	P	immune system process
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0006952	P	defense response
GO:0003824	F	catalytic activity
GO:0005829	C	cytosol
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0004888	F	transmembrane signaling receptor activity
GO:0007165	P	signal transduction
GO:0007178	P	transmembrane receptor protein serine/threonine kinase signaling pathway
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0006950	P	response to stress
GO:0006955	P	immune response
GO:0007154	P	cell communication
GO:0007166	P	cell surface receptor signaling pathway
GO:0007167	P	enzyme linked receptor protein signaling pathway
GO:0008150	P	biological_process
GO:0009605	P	response to external stimulus
GO:0009607	P	response to biotic stimulus
GO:0009608	P	response to symbiont
GO:0009610	P	response to symbiotic fungus
GO:0051707	P	response to other organism
GO:0009620	P	response to fungus
GO:0009623	P	response to parasitic fungus
GO:0009719	P	response to endogenous stimulus
GO:0009723	P	response to ethylene
GO:0009725	P	response to hormone
GO:0009814	P	defense response, incompatible interaction
GO:0009987	P	cellular process
GO:0010033	P	response to organic substance
GO:0012505	C	endomembrane system
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019899	F	enzyme binding
GO:0019199	F	transmembrane receptor protein kinase activity
GO:0019538	P	protein metabolic process
GO:0023052	P	signaling
GO:0070887	P	cellular response to chemical stimulus
GO:0032870	P	cellular response to hormone stimulus
GO:0036211	P	protein modification process
GO:0038023	F	signaling receptor activity
GO:0042221	P	response to chemical
GO:0043170	P	macromolecule metabolic process
GO:0043207	P	response to external biotic stimulus
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044424	C	intracellular part
GO:0044444	C	cytoplasmic part
GO:0044464	C	cell part
GO:0045087	P	innate immune response
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051020	F	GTPase binding
GO:0051704	P	multi-organism process
GO:0051716	P	cellular response to stimulus
GO:0060089	F	molecular transducer activity
GO:0065007	P	biological regulation
GO:0071310	P	cellular response to organic substance
GO:0071369	P	cellular response to ethylene stimulus
GO:0071495	P	cellular response to endogenous stimulus
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:0098542	P	defense response to other organism
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K04733	IRAK4; interleukin-1 receptor-associated kinase 4	EC:2.7.11.1	MAPK signaling pathway	ko04010
			NF-kappa B signaling pathway	ko04064
			Toll-like receptor signaling pathway	ko04620
			Toll and Imd signaling pathway	ko04624
			NOD-like receptor signaling pathway	ko04621
			Neurotrophin signaling pathway	ko04722

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network