result

Gene information

Detail information of g133222

Location

Gene	Chr	Start	End	Strand
g133222	Scaffold_42183:HRSCAF_425269	528115	532354	+

Sequences

CDS

Protein

Gene

>g133222.t1
ATGCACAACCGGCTGCCCGTCCTCGAGAACAGCCTATGCATTTCTCAGGCACATCAAGTGCAACCACAAGCTTTAAGTGCTGCTGTTTCAATGGGATTTGTTCAGAGTCAAGCTTTTATAATTCAAAATGTGCATTCTCATCATGGTCCATGTCTGTCCATGCCAACTGATGCGGCTAACATTTCTCTGGCTCATGATTCACATAGTGTTCATTTCTTGAATGCAAATGCTCAAGAAAAATCATCAGTTGGTGCACTTCAGCAATCTGAAGCTCTTTCCACTCCAGCTAATGCAGGTCCTATACCTATCCAGTCTATTTACTATAAACTGATGAACCTTATGCACTAACTATAGTATAATGAATTTTATTTATTTACTTATATTTATAGTTTATTTACTTAAATATTTCTGAAAAGATCGGCTAACCATTAACATATTCTCTATGCTTGGAAACTTATAATTATAGTAATACTTTTTTCAAAAAAGATAGAAAAGGAAAGAAAAAGAAAAAAGGATCAACCTAGTGTTTGTTATACTTGACCCGAACCCATTACCAAATCTAAGATAGTTGATATTTGGAGATCAAAGCAAGAGAGTAGTAGTACACATTAAACGCATGACAGTTCTGGCAATTATTTTTATATTCAACAAAACTTGATGATTTTTGATTTGCATGGAGCAGCACAAGTCTTTTACCACAATATTGGTAATCCTGTTATTTTTGTAATCAAAATTACACTAGCACCTAAAAATTATTAAATTTCCATTTCTTTTTAAGTCTTAACATGTTGTTCGATTATGCAGCCGTGCTTATTGAAAATGGAAAATTCCTCCTTTCTGCCAAACGAGTTCGTCGCACTACAAGTACCGAGTATATAATCTCTATGAACACTGACAATATATCTCGATCGAACAAGGCTTACACTGGGAAATTGAGGTAACTTTGTTTATTATAAGCTTTCATCATTTTTTTACACGTGCACTTTAATTTTTTATCTTATTTTGATGTTACTTAATAGAAAGTAAACATTTACGACCAAACTACTCTATCATATTATATAATGTATTGAAAGTGTGAAATGAAGCTATTTCATCTGTTTTGGTTGAAATCAAAATAGATGTTCATTGTATGGCCTACTGTAAATCAAGATAAATAGTGTGAAATGAAGGTGGTATACTTATAAACAGTTGAGCTGCAGCAAGAGTTAAAGGACTTGTAAATGATGCTAATTCAGGTGGGAAAGCCAGTGCGTGATGTTGTAGTTTTAGGTGGGAAGTGATGCGACCTTGCATGAGATGATGTCACTGTATGGAAATGGCTGCAATTAAGACATCCCCACATGTGCACAGGTAATCCTTGCAGGCTGGCTCAACTTTTTATAAGAATATTTGTGTGTATAGACTAGCAAATTTGGAATGTGGAGTAGGTGACAGTGAGTGGCAGAACTAGCATATATGGAGTAACTACACACGAATGAGTGAGGCTGCAATGTTGAGTATGCAACGGAAGTTTAGATAAAAGTTTGTTGAGCAAGTGATGGAATCCTTGCAGGCTGTAGCATATGAACGAGCGACATTACAATGTACAGAATTATGACTGTATGACCTGGTACTAGTGTTCAAGTGAGTGCGCTATAGAGAGACACCATATGTAGTGCGATACCGCTAGATAATGAGATAGGATGCAGAAGGGGAGAATGTTGATTCAGCTGCCATGACCACTGTACAGGTATTCAATAGAATCTAAGGAAAATATTAGTGGTTTTGAATGCTATTTTATAATATTCGACTGTAATTTTTCTCTAATTACACCTTTTGACTGTTTTATTTTGAAATTTTTTCTTGATAATTAAAGTATAAATTGTAATGTGGTTTTAATATTAAAAGAAAACAAAAATACTATTGTCATGAATATTTTCACCCAAATTAAAAAGAATAAAGTGTAAAGTAAATCACCGTGAAAGTAATTTATGCTTGTATTCTAAATACAATTGGACAAGATAATTTGATGGTATTTATATAAATTTATTTGGTTTTAAGGGATTACGAAATTAATTTTAAGTTGATCATATTTGGGATTAAAGGAAATAATTCACTCTATGTTTGCCGTGCAACATTTCTTTCATCAAATTAAATTAGTGACCCAACAAATGTCTATGACGGTTATATTTTTCACTTCTCCAAATAGAAAATTATTTATTATATTTTGTTTTTACTATACGTTTTCTTTTTTTAGATCAAATGACAATGTAGGAATAGGTTTCTCTCTTTTTTTTCTCTCACATTGCTTCTGTTTTACCTACTCTAAATTCAAATGTAGGGCATGGACTTTGCTATAGATGAGTGATGCTTAAATAAATTTTGGTTTTACTTGAACATATATTCTCGTTTTAGGACTTAACATGTATATACATGATTAGTTTATTGAAAATAGTCGAGTCAAGTTGCCATTTTCTATAGGTTTACAAAGACTTAGACCTAAATTATATTAAAAGTTAGATTATTTAAAGCAAAACTATGTCTACTTCCAAAATCAAAATTAGTTTAAAAGTGCATTTAACAATTTAGAAAAACATTAAAATGCAAGTGAACTGATCTTTGTTAGTATTTGATCAGTAAAAAGAGGACAGTAAGGAAAAAATAAAACAATGATACATATCATTAAACAAAATGACTTGTTCAGTTTCTTATCGAAATTGTTTGACAATTAGCATAAGATAGTCATAAGCAGCCATAGTAACTAGTTAGAACATGAGCAAAGCATGTGAAATTTAGCTGTGATATCTTCTTCATATGATATAAGTTGTTTGGTTTCAGCACTTTTGTACCCGACAGTCGTTTGGTTTTAGCACTTTTCATTCGTTCTCGACTGCATTTCATGTTAGTGCTGCCTACATTAACTCTGTGCTGTATTTATTGTATTTCTTATTTATTTTGCTAATTTTTGAACTTTTACTTTACATTGAGATAGATATCTTTGATGCAAAAATGTGCCGCATCAAGTTATGGATTCAAAGTTATTTTTGATGCCAGAACTACATTTTTTGTTTTGTATGCTTGTATGTATTTCTATTTTTTTGTCACTAGCTGCTACTTGTTCTACACTTTTTATAAAATATTATGGACATATTATATATGTTTTGGTGTAAGAATATTGCGTATTTTGATTATGTAATGTTATATGTTGATTATGAGAGTGCGATTAATATAATATGTTGATTATCAAATATGCATGTTGATGTTAACTGTGCCGGCATATAAACTGTGCTTGATGGATATCGAAATGGTATTTGAAAAAAAGGGAGAAAATGTAGAAATAGTAAACGAGAAGATTTGTAAAATGCTGTTTAAAATTTTAACAACATTTTAAAAACGCGGTGGTAGACTTCAATAGCGTTTTGAAAACGCTGTGGAAGACTTCAACAGCGTTTCAAAACCGTTATAAAAGGGTTCTTAACAATGAAAAAGCATTAAAAAGAACACTGACAACAACATATAAAACGCTTTAAATATATTATGCCAAGAGATAGTCGCTATTAAATACATTTGACAACAAAATTCGAGCGCAAAGAAAAGTTTTTGGTTCATCAAAAGAAACGCTATGAAGTGTATTAATAACATCCATAAAACGCTATTATAAACAAACTTTTTACAGCGTTTACTTTGTTGTTATAGTATGTTCCTGACCTATAATGGCATGTCGTTAGACATTGTAGTTAAAAACACTATTAAAGCCTTTTACAGCATTTTTAAGCGCTACTAAAGGTCCGGTTTGTTGTATTGATTGTTCACAACATAATTCTAATCAATCCAAATCATATCAACCATCAATCATCGTCAAACAATCAATTTCATCCAATGTACCAATAAGCCCAATCAATCATTCCAAGCCATAGCACAAATCAAACAATTTCAGTCAAGCGATAGAACGTAAAGTATTACACAATAGATGTGAGTAAAAAGAAGCTGAATTGATGCAATTCCACCTAGCACCACCATCACCGTTCATCATCGCCACGTTGCTCCTTTATGTTGTGTGCACCAGTTCCTTTCTCGTGCCTTGTCAACCGCTAAGATCTGGCCGAACAACCAAACCCACATGCAGCTACCGCCTTCTCCATCTCGTCGTGGCCACCATCACCCAATTGCCCACATCCTTGATCGACGTCTCCTCCACCAGAACCCAACACGACCACCACTCATTCGACATTGCCAATTCGCCCAATCACGAGACCTCTAA

Functional annotation

Database	accession number	e-value	annotation
nr	MBA0766522.1	2.4e-09	hypothetical protein
Swissprot	Q9FRH7.1	5.5e-11	SKP1-interacting partner 26
trEMBL	A0A2P5YLC2	1.7e-09	Tubby-like F-box protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G76900.1	45.88	4e-13	71.6	AtTLP1;TLP1	tubby like protein 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g133222	AT1G76900.2	85	31	2	99	168	150	234	45.88	4e-13	71.6
g133222	AT1G76900.1	85	31	2	99	168	150	234	45.88	4e-13	71.6
g133222	AT1G43640.1	48	17	0	99	146	148	195	64.58	1e-12	69.7

Ortholog group

Species	Genes
Allium cepa	g133222.t1; g456767.t1
Allium fistulosum	AfisC7G00993
Allium sativum
Arabidopsis thaliana
Oryza sativa	LOC_Os12g06630.3

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF01167.15	Tub	Domain	103	145	39.5	4.4e-10

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0016020	C	membrane
GO:0005829	C	cytosol
GO:0005488	F	binding
GO:0005543	F	phospholipid binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008289	F	lipid binding
GO:0008150	P	biological_process
GO:0009536	C	plastid
GO:0009605	P	response to external stimulus
GO:0009607	P	response to biotic stimulus
GO:0051707	P	response to other organism
GO:0009620	P	response to fungus
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0035091	F	phosphatidylinositol binding
GO:0043167	F	ion binding
GO:0043168	F	anion binding
GO:0043207	P	response to external biotic stimulus
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044444	C	cytoplasmic part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051704	P	multi-organism process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0071944	C	cell periphery
GO:0080090	P	regulation of primary metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K19600	TULP1; tubby-related protein 1	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network