result

Gene information

Detail information of g136971

Location

Gene	Chr	Start	End	Strand
g136971	CHR2	32049723	32055384	+

Sequences

CDS

Protein

Gene

>g136971.t1
ATGATCCCTTGCGAATCATCGTCAAGCTCAACCCGATTAGCACCAGGATTTCGATTTCATCCAACAGATGAAGAGCTTGTTAGCTATTATTTGAAGCGCAAGATATCAGGTCTGCCTCTGCGCGTAGACGCGATTGCGGAGATCGATTTGTATAAGAAGGAGCCATGGGAGTTGCCTTCTCTCTCGAAATTGCAAACCCGTGACATGGAGTGGTACTTTTTCAGTCCCTTGGATCGGAAGGATTCTAATAAGTTGCGGACGAGCAGGGGAACTATGGAAGGATACTGGAAAACTACAGGCAAGGATCGTGCTGTGAGGAGTACGTATTCTAATGTTGTGGTTGGGATGAAGAAGACGCTTGTTTTTCATGAAGGGCGGGCGCCAAAAGGGAAGAGGACTAACTGGGTTATGCATGAGTATAGATTGGAGAGTTCCGAGAATGATGCTGCTAGTTCATGCGAAAATACTGCTCTTGTGCATCCTCAGGTGAAATTTCTATGCAAATTCCATATACTGATCAGATTTTGGGTTTTTTAGGGCTTATATGCACAAGAATTTTGTTTTTGTTACATAGTTAAATTGAGATAGTATTGTAAACCACATAGTTGTTTCATTTCATTCTATATATAATATGAGGTAAGAACTGGACTTTTTTGGTATAGTATAAAAGAGAAATTGGAAGTCCTAGAGTCATGTAAGAATGTTGTGTATTAGTATGTTCTTGGATAGAGTTATGCAATCACTTATTGGATATATATTATTTGAGTTTATGACCTTTGATGTTGATGTTACTAAGTAACATAGTGGCGTTCCTTGCTTTGATGCAAAAATTTACTTGATGAATTAAAAGTGCAAATTAGGATATATTATGAGAGCTTTGACATTATTTCATATTCTTATGAAATAGCTATTTAAATAGCTTGTTTGGTGTAGTTTTGAATTTGATTGTGCTATAACTAGCAGTAACTCAGTTGAATTAATGTACTGCATTGTGGTTTCTTGGTGGAAAGGATTCCTTTGTTGTTTGTAGAATCTTTCAAAAGCATGGTTCTGGACCACAAAATGGAGCTCAGTATGGTGCGCCATTTATTGCGGAAGAATGGGAAGATATTCATGATAATAAGACTCCAGAATGTGCAGAAAGGCACGGTAATGGCCATGATGCAGCATTAATGTGTCTCACTAATGAGCAGTACTATGCCGAACTTGATATTGACATGGTATGTGCTCTTTTTTCCTTGTGCCAAGTTTGTCATTGGTAAGAATGGTTAATTTCCTAATAAAGCGTAGATAAGTCGATGAATGCTAGTTTAATAGTTGTTTGGAGATATGAATTTGAATACTTTTTAGAATTTGCATACTTCTTAATGCAGATGCATTTACTTAATTTTTAAAATGTCAGTTCCATCCATGTTATCTTATTACTTATGTTGAACATCTTTATCTCAGAATTGCCTTTCTTCATCGGAAGTGGTTTTGTTTTTAATCTTGTCTATAGATGCAAATTATGTATTCGTATTTATTTCACTTGTATAAATGTTACGGTATTATTACTTAATTACAGAGTTGTGATACGATTTCAGGGCGGCTATGTTACTAAAATCTACGTAATAAAGAGCATATGTACAAATCTTTCTTGAGCATGGATTTATTTGAGCTTGAGCTCTAACTCTCGAATATCAAAGTGATATATGTCTTTTGCGTAATACAAATGCACTGAACATGATATAAATTAAAAAATTAAAAGTTGAATAATCCGTCAAACAGATAAAAATTTACAATTATATGCCTGGGGCGAGAATTTGAATGTTCGATGTGTGAATTTGCTATAGAATCTTAGCTAGTGTCACAGTATGATCATATGAAGAAGTCCTATTCTAGGAGGAAAAACAATCTTACATTATTGCTTGGACAAAACCATATGTGCTATAATTCAAGAACATATATCTATCATGTCTAACACACTCTTTTAATTATGAACAAAAGAATATAGTTATGTTTACCTACTAGTATTCATTTTTGACATTTGACCTCATTGGAAAATGTTTCTACTTCGTATACTTTTCTAAAAAGCAGCTCGCCATTTACTTGGTATTCACATATTTTGATAAAAATGTTCGTGTAATTTACGAATTGGACTCGATGTGATGTGTATAGTTCAAGATTCGAGGTAGGCCTGTAAACGGATACTTTTGGATACGGATAGTGCTATATCCGTATCCGTATCCAAAATCATTTTCAGATATCGGGTATCTGTATCCGCCGATGTGGACGGATATCGGATATTTGTCGGATTTTTTTCGATCAGTTCACATCCAATAAATCTAAACAAATAAATAGAAAATTTTGATTTATTACAAATCCATTTCTATACTAAGTATATAAAAAATAATAAATACACTAAGAAAAATATTTTTAAGTGGTAAAAATTGTTTTTATATACATATTAATTCTTTTACCTGGATAAAATAGTAAACGTCAATTATTTTATGTACTAGAATACATAAAAATAACTATAATCTTGATAAAACTGGACGGATAATTATCAGATACGGTCATATAATTATCGGATGCGGATATCGTTTTTCGGATCCGTGTCCGTATCCATTTTTTGGATATCGTATAATTTTCATATTTCGGATACAGATTTGGACAGATTTTGGATTTTTCAAGTACTCGTTGACAACCCTAATTTAAGGTTTCAGCCGGAACACTCAAATTTCAGTTGATCCATCCTGGTTTTGGTAGAGATTGAAACAAACCATACCGAAATTCGAGAAATTCGAGTTCTGGTTAGAAAAGGCTAGTAAACTTCAAATCCATACATATGGAAATTTTTCATGAAATTCAAAGCTTACAAGTATCTAGATATACAAAATCCAAAATTTAACTTCAAAAACAAATAAGTTATGTAGTATATGAATAGTAAAATTGAAAGAAGTTGAAAACATAATAAACTAATCAACATTTATTGGCATAGTTGTTATAAATATATTTTTATTGATCAATAGTGATTGTTCGTCTTCTTTGGCATTTGAAAAATATGATATATATACATTTTATTCTAATAAATTTAACATGTATCATTGTAATTTTGTAAAATAAAATAAATTTCAAAATTGGAGATGCGATTTGGGACCAGAATTGTCTATATGGATCGACATTTCTATAGGCTTAAAATAAAGAAAATGAAATTTTGCATAATGCACATCTTGTTATCCAGAATACAAATTTACAAATATATAATTTTTAATAATCTATTTTTATATATAAAATAATTATCAATGCGAAACTGGAATTGAAACCGAAATTGACAAGAATTTCAAAAAAATTAAATGACCAAAACGGAACTGGAATCCGAAATCTTGAACCCTGAGTTCTAATTCACAAGCTCATTCAAATGATGTTGAAATAATATTTTTGGCACATATAGAGAGATGAAATCATTTATCGACTTTGTCAAACTGTTTCTTGTACTTTCTTTTTTCCTTTTTCTTTCATATGATCGTCTTTTCCCATCTTACGTAAAGTTTAAAAAAAACAAACACCATTGTATGCAATGAATAACGCACTAGAACTGGTAACAACATACATCTTAACTGTCTTTCCCATGTTAGCTAAGCCATGATGTGCTCAAAAGGTTTGGTGTTGTTTGGAGTGAAGGGGGAATTGTTATATGCTAAGTGCTGTGTTTATTATTGTATATTGGTCCCAATGGTGTACAGACAATGTCACAGATATTTGCAGTTACTCTGCTCGTTATTCATTGAGCAGTTGGGTAATCTGTAATTAGTACATGGCTATTTTCTTCGATTCCCCTACAAAATTCTATTTCCTTCTGTTACATTTGTCCCTTGAAAGTATTAACGGTTGAAATAAGTCTGAAAGTTTGTCTTATTATTCTGCTAAACCTCATTCTAGTTATCTCTGAGTGTCACTTCATGACTGTAATGTTATATTGTGTTCTCTTTCTAGAACCAAATACTGGCAAATCATCAAGATAACAATGAATCGACAAACTCAAAAGATTGTCAAAGTCATGCAGATGAACCAACTCAATATCAACTAGTAGACAACCCAGTTGCAGACCATCTATCTGGGGAGCAAATTTGTGATAGTCATGCATATGATATTTCCTTTACACTTGAGGATTTAATTGATTTTGATAAGCCAAATAACATAGATGGAAACTTGCAAGAAAATGTTGTTTGTATTGATGGTAACACAGCAAGAAACTCTAGCATTGCATCAGACAAGAGTGATGGATATCTGGAACTAAATGATGTTTATGCAAATCCAAATGGACATTGCACCAACAACACTTTAGACGATTGCATGAGATCAAACCATGCAAATAATGCCAACACCTCTCTAAAAATAGAAGATGCCGAGATCTTCAACAATTCCAATGTGACAACAGCTACCGAAGGGGTACATAGTGTGCAGCCATATGATTATCTTAATCCTGCAGATGGTAATTACCTTGAAGACGATACCATGTTTTACGATGCACCTAGCAACGATGTTCAGTTTACAGAAGATACTTATATGAACATAAAAGAATACAATCCTACCGTTACTGATTTTGATTTGGTGGATGATTTGATGGCTTTTTTCGATGCGACGGAACAAAATGTTGATCCTTTAAGTGCAGATCAATCAGACATTGACAATCCTACAGTCAAGTCAGAGGTAATTTCAGATTATTGTTTCCTTAAAAAATACACGATGGTAACACTTATTTCATGAAATGTAAATTAAACTGCAGGTGGAGGGCAGCAACTATCCTACAGGAAAAGACTGCCTACAGACTCCTGGAGCAAATATGGGAATGGGTGCACCATCGACAGAATTCATAGATGCTGCCAATCCATTGGAAAAGACTAGTAAGAACGGCACGATTGCCACAGCTTTTATTTTTGGTTGTTAGCGTTTTAAACTTGGTAGAAGTACACTTGATGTTACCAAATTTTGTTGGTGTAGATAGAAAAACTAGCGGTGGCATTACGAACTGAATTTACACATATGCTCTTTTTTCTCACGTAACTAAAATGAAAATATATTGTTTGTTAGACGTGGAAGCAAATGACGGTTGGAACAAGTCATTTAGAAAGCATGTTGTGGATATGCTGGGCTCGATTTCTGCACCACCTGCAATGGCTGCTGCTGATTCGTGTAAAGGCAAAGGTATTCAGATATCGAGTAGTGGCAGCAGCTCATCTATTCGTGTTTCTGCAGGTATGATCCAGATACGTGGTATTTCGGTCACTGGACATCCAGAAAAGTGGACCCTATCGAAGGATGGAGAAATAAACTTCATTTATACCTATGCAAATGGCGCAGTTTGCAAATTGGCAAGCCGTCAACCACCACCTGCCACTGTTTTTGGAGCGTTGCTTCGAAGTGGAATATTTCTTTTTGGCTTCTCTGTGCTCGTTCTTTCCATAACCATGAAGCTAGGAGTTGGTGTTTATAGGAAATAACTAAGTTTCCAGAGACCCAAAAAAAAAAACCTCGTTGCTTATGCTTTGATCATAGATTTCAGAGGTTGAAAGACAAAAACAATAATAATGTTATGTTTTGCATAAATTTGTTGGGTGCTAGGAATATGCACCCGTTCTTCCGACTATTACTGTTGACTCGAACTAATTTATTGTGCTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010935812.1	9.3e-105	NAC domain-containing protein 78 isoform X1
Swissprot	Q84K00.2	7.0e-65	Protein NTM1-like 11
trEMBL	A0A6I9S254	6.7e-105	NAC domain-containing protein 78 isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G04410.1	61.50	3e-67	253	anac078;NAC2	NAC domain containing protein 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g136971	AT5G04410.1	187	62	2	9	195	5	181	61.50	3e-67	253
g136971	AT3G10500.1	181	57	3	9	189	5	175	62.98	1e-63	241
g136971	AT3G10480.1	190	67	4	6	195	20	199	59.47	3e-62	237

Ortholog group

Species	Genes
Allium cepa	g136971.t1; g147399.t1
Allium fistulosum	AfisC2G05256; AfisC2G08857; AfisC2G08866
Allium sativum	Asa6G00690.1; Asa6G06658.1; Asa6G06659.1
Arabidopsis thaliana
Oryza sativa	LOC_Os02g57650.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02365.12	NAM	Family	15	142	94.8	4e-27

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0001101	P	response to acid chemical
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006950	P	response to stress
GO:0007275	P	multicellular organism development
GO:0007568	P	aging
GO:0008150	P	biological_process
GO:0009314	P	response to radiation
GO:0009414	P	response to water deprivation
GO:0009415	P	response to water
GO:0009416	P	response to light stimulus
GO:0009628	P	response to abiotic stimulus
GO:0009819	P	drought recovery
GO:0009642	P	response to light intensity
GO:0009644	P	response to high light intensity
GO:0009889	P	regulation of biosynthetic process
GO:0009891	P	positive regulation of biosynthetic process
GO:0009893	P	positive regulation of metabolic process
GO:0009962	P	regulation of flavonoid biosynthetic process
GO:0010035	P	response to inorganic substance
GO:0010150	P	leaf senescence
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010557	P	positive regulation of macromolecule biosynthetic process
GO:0010604	P	positive regulation of macromolecule metabolic process
GO:0010628	P	positive regulation of gene expression
GO:0045935	P	positive regulation of nucleobase-containing compound metabolic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031325	P	positive regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031328	P	positive regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0042221	P	response to chemical
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043565	F	sequence-specific DNA binding
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048366	P	leaf development
GO:0048367	P	shoot system development
GO:0048518	P	positive regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0048731	P	system development
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051173	P	positive regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051254	P	positive regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:2000377	P	regulation of reactive oxygen species metabolic process
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:0099402	P	plant organ development
GO:1901363	F	heterocyclic compound binding
GO:1901700	P	response to oxygen-containing compound
GO:1902680	P	positive regulation of RNA biosynthetic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1903508	P	positive regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0090693
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network