result

Gene information

Detail information of g139976

Location

Gene	Chr	Start	End	Strand
g139976	Scaffold_42947:HRSCAF_426033	311332	312377	+

Sequences

CDS

>g139976.t1
ATGGATCGTAAAAGAACGGCGCCGTCACGAGGATCCACGTCGCAGCCGTATAGGGAAGACTGCTGGAGCGACGGGGAGACGTCGGTTCTTATCGACGCGTGGGGAGATCGCTACTTGGAGCTCAACCGCGGCAACATCCCTCAGAAGCAGTGGCAGGAGGTCGCCGACGCCGTCAACTCCAGGCCGTGCGACGCACGGCGTCCTCCTCGTACGGACATTCAGTGCAAGTACCGTGTCGACACGTTGAAGAAAAAGTATAAGATCGAGAAGAACAAGATCGCGGAGGCCGGAGGCTCTTCTTCGGTTAGTTCATGGCAGTTTTTCGACCGCCTTGATTTTCTGATTGGTTCATCTTTTAATAATCAGAATAATTATGGAAATTTCAATAGCAACAGCAGTAGTAGTAAGAATAAGAACAAGCCTGCGATGAATGTTATGAAGCAGCCGCCACTTGCCCTTCCTTTGCCTTCCAGCCGTGTCAAGGGCTATCAACTTCCTCCTCCTGCAGCCATTGCTCGTAACATGAATGAAAATGGTTATGATTCAGATTCATCATTTTCAAACGGAGATAACAGTGCTGGCAGGAAAAGACCTAGGGTTTCAAATTACGCAAAAAAGGAAAAAGAGGAGGATGTGGTTTCGGAGATGTCAAAGGCGATTGAGAAGATGATGGATGTGTATGAGAAAGTGGAGATGGAGAAGGGGAAACAGATGCTGGAATTGGAGAAGCAGAGGATGGAGTTTATGAAATCGATCGAAGTTCAAAGGATGCAGATGGTTGTGGATACAATGAAGTTGTTTACAATGAAAAAGTGTGGGAAAGGTAAGGATGAAGATTCATATGTTGCTGCGCTTAATTTGGCACTCTTGCCTAAGTTCTTTAAGTCTAAGTTTCATTTATGCCTTTTGACTTGGATTAAGAGGATAGTTGTCTGCCTTATAAGTTATGTTTGGTATGTTAGGATTAATTTAAAATGTATTTGGAGGAGATATTCTATTATCATTGTTTGTTAA

Protein

Gene

>g139976.t1
ATGGATCGTAAAAGAACGGCGCCGTCACGAGGATCCACGTCGCAGCCGTATAGGGAAGACTGCTGGAGCGACGGGGAGACGTCGGTTCTTATCGACGCGTGGGGAGATCGCTACTTGGAGCTCAACCGCGGCAACATCCCTCAGAAGCAGTGGCAGGAGGTCGCCGACGCCGTCAACTCCAGGCCGTGCGACGCACGGCGTCCTCCTCGTACGGACATTCAGTGCAAGTACCGTGTCGACACGTTGAAGAAAAAGTATAAGATCGAGAAGAACAAGATCGCGGAGGCCGGAGGCTCTTCTTCGGTTAGTTCATGGCAGTTTTTCGACCGCCTTGATTTTCTGATTGGTTCATCTTTTAATAATCAGAATAATTATGGAAATTTCAATAGCAACAGCAGTAGTAGTAAGAATAAGAACAAGCCTGCGATGAATGTTATGAAGCAGCCGCCACTTGCCCTTCCTTTGCCTTCCAGCCGTGTCAAGGGCTATCAACTTCCTCCTCCTGCAGCCATTGCTCGTAACATGAATGAAAATGGTTATGATTCAGATTCATCATTTTCAAACGGAGATAACAGTGCTGGCAGGAAAAGACCTAGGGTTTCAAATTACGCAAAAAAGGAAAAAGAGGAGGATGTGGTTTCGGAGATGTCAAAGGCGATTGAGAAGATGATGGATGTGTATGAGAAAGTGGAGATGGAGAAGGGGAAACAGATGCTGGAATTGGAGAAGCAGAGGATGGAGTTTATGAAATCGATCGAAGTTCAAAGGATGCAGATGGTTGTGGATACAATGAAGTTGTTTACAATGAAAAAGTGTGGGAAAGGTAAGGATGAAGATTCATATGTTGCTGCGCTTAATTTGGCACTCTTGCCTAAGTTCTTTAAGTAGGATGTGTGCATGTATATATTCATTGGAGGTCTAAGTTTCATTTATGCCTTTTGACTTGGATTAAGAGGATAGTTGTCTGCCTTATAAGTTATGTTTGGTATGTTAGGATTAATTTAAAATGTATTTGGAGGAGATATTCTATTATCATTGTTTGTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_009416507.1	5.4e-50	PREDICTED: trihelix transcription factor ASIL2-like
Swissprot	Q9LJG8.1	1.5e-28	Trihelix DNA-binding protein ASIL2
trEMBL	A0A804KGJ8	3.9e-50	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G11100.1	37.87	5e-31	132		sequence-specific DNA binding transcription factors

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g139976	AT3G14180.1	101	33	2	18	118	80	176	63.37	4e-31	132
g139976	AT3G14180.1	100	56	2	173	263	301	400	35.00	2e-08	57.0
g139976	AT3G11100.1	272	105	7	18	274	18	240	37.87	5e-31	132

Ortholog group

Species	Genes
Allium cepa	g139976.t1; g16323.t1; g245324.t1; g262048.t1; g343557.t1; g539167.t1
Allium fistulosum	AfisC1G01356; AfisC1G04834; AfisC5G06923; AfisC6G00025; AfisC6G05057; AfisC7G02308
Allium sativum	Asa0G04168.1; Asa3G00647.1; Asa3G03017.1; Asa3G03018.1; Asa6G07093.1; Asa7G01319.1; Asa7G02835.1; Asa8G05987.1
Arabidopsis thaliana	AT3G11100.1; AT3G58630.1; AT5G05550.1; AT5G05550.2
Oryza sativa	LOC_Os01g48320.1; LOC_Os05g48690.1; LOC_Os05g48690.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13837.3	Myb_DNA-bind_4	Domain	19	113	87.2	6.7e-25

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network