result

Gene information

Detail information of g14309

Location

Gene	Chr	Start	End	Strand
g14309	Scaffold_43343:HRSCAF_426429	88872	89216	+

Sequences

CDS

Protein

Gene

>g14309.t1
ATGACACTTATCTGTGTATTGCATCAGTCTTCTCTAGGAAGATTGAAAGAGGATGCAGCAAGAAAATACTTTCAACAGTTAATCGATGCAGTCGATTATTGTCATAGTAGAGGTGTTTTCCACAGGGATTTAAAGGTTCAGAAATAGTATCCAATAGTGTTCTCCTTTTTAAATATCATGTAAGATAATTTCCAGTTGAAGTAAAATTTGTTTTGTACCTGCAGCCTGAAAATTTATTGTTAGACTCAACTGGTGCTCTAAAAGTTTCGGATTTTGGGCTAAGTGCATTATCACAGCAAGTTAGAGTAAGTTGAACTGCTATTTATATTTTGTGCTTTATTATTATCATTTTTCTTTAAGAAATGATTTATTTGATATATTTGGAAATTCATATTAATGCCTTTATTCTTTATCCGCAGGAAGATGGTTTACTTCACACAACATGTGGAACTCCAAACTACATTGCTCCTGACGTAAACGATTTGTGAAATCATACAATTTACTCGATCGTTTTCTTTTTTTATTTTAATTTATTGTTTATACCCTTAATTATAATCAGGTCATCCATGACAAAGGATACGATGGATCCAAAGCAGATGTTTGGTCATGCGGTGTTATTCTTTTTGTATTGATGTCTGGTTATCTTCCCTTTGAGGACTCCAATCTTATGTCACTATATAAGAAGGTGAAGTTCTATACTCAATATTTTATTCCTGTATATGCTATAGTCCCTTTTGGAATTTGTAGGTAGATTTTATTGGTTGTTTTTTTTCTTACAGATTTCCAAAGCTGATTTCTCTTGCCCTGCTTGGTTCTCAACTAGTGCGAAGAAACTTATAAAGAAAATCTTGGATCCTAACCCCAAAACAGTAAGTCTTGATTTTGCACTTTTGGACTTTTTTTTCTTTCTTTTCCTGTAATTACTTATAAGTAGTCTAAACAATTTCAAAGAGGCTAATCGATATTGACTGTTTGACAACTTACAATGAGGTGATATAAGCTACATAGAAATTGGTAAATCATAAGCAATAAGTACTTGTTTATGACAGACTTCATCTTTTATGAACTTTCTAACTTATATATGCAAGCCATTTAACTTTTTATTGTTCACTTTAAACTAATTACAACTCAAAGCTATCTTGAAGTACTTGAAAATTATTGTTTCCAAATCGGCTTTTATTTTATTTTTGGCCATAAATTTTTTATGATAAACCCGATAATTCTAGTTTGGAGCAAACATCTTATGGCTTTTAAGCTCAGTGCTTCTGAGCGCTATATACACGTGTTATGCCCTTTTGACTTTGTACTTCAATATTGATCTGATTTCCACCAATTAACTTGTAATTTTCTCTTTGCAGCGAATTACTATGTCGGAGATCAAAGAGAACGACTGGTTTAAAAAAGGGTACAAACAGCCTTGCTTTAAAACTATGGATGTTAATGTAGATGACGTTCATAGCATCTTCGATGACAAAGAGGTTATTTTACGAACTTCTCATATTTATATAATATCATATTATGTCGAATAAAATTCATGAATTGCTGAGTATGCTCTTTATATTGCAGGAATCAGGAAATCTTGTAGTTGAAAGACGGGAAGAAAGGCCTTCTGTAATGAATGCCTTTGAACTCATTGCGACATCTCAAGGTCTCGATTTGGGGAATCTATTTGAAAAGCCTACGGTATACATTATTTATATCTTTTAAGACCCATCTGATATTTATTTTTATTTTTTTCATGTGCTCTAATGGAACATTTTGTACACGCAGGGAAACGTGAAAAAGGAAACTAGGTTTACTTCAAAGCTACCAGCAAGTGAAATTCTTTCCAAGATTGAGCAAGCTGCCGCACCTTTGGGATTTAATGTTGAGAAACACAACTATAAGGTGCTTTTTTTGTTTTGACAAATCTATCATCTGCTTTTTTAATTCAAATTTGTAAATGTGATTTTACAAAAAATGATGTCATTCTCATTATAGTTAAAACTGCAAGGCGAGAAGATAGGAAGGAAGGGCCATTTACTATTGCAACAGAGGTACATATGTCGGACATAATTAATACCCTTTTTTATGGAAAAATATGATAGTCGTATATTAACTTTACTGTATCAAATAAAGGTGTTTGAAGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020271132.1	2.0e-136	uncharacterized protein LOC109846317
Swissprot	Q6ZLP5.1	9.9e-133	OsCIPK23
trEMBL	A0A0A7LU83	4.2e-136	non-specific serine/threonine protein kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G30270.1	74.32	5e-132	467	ATCIPK23;CIPK23;LKS1;PKS17;SnRK3.23	CBL-interacting protein kinase 23

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g14309	AT1G30270.1	296	73	1	10	302	121	416	74.32	5e-132	467
g14309	AT1G01140.3	284	89	3	13	294	112	392	66.90	7e-114	407
g14309	AT1G01140.1	284	89	3	13	294	112	392	66.90	7e-114	407

Ortholog group

Species	Genes
Allium cepa	g14309.t1
Allium fistulosum	AfisC1G01197; AfisC1G09236
Allium sativum	Asa7G05251.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	13	175	159.5	9.2e-47
PF03822.11	NAF	Domain	216	276	74.5	5.1e-21

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0001101	P	response to acid chemical
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0003824	F	catalytic activity
GO:0005829	C	cytosol
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0007165	P	signal transduction
GO:0035556	P	intracellular signal transduction
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0006810	P	transport
GO:0006811	P	ion transport
GO:0006812	P	cation transport
GO:0006813	P	potassium ion transport
GO:0030001	P	metal ion transport
GO:0006950	P	response to stress
GO:0007154	P	cell communication
GO:0007584	P	response to nutrient
GO:0008150	P	biological_process
GO:0009414	P	response to water deprivation
GO:0009415	P	response to water
GO:0009536	C	plastid
GO:0009605	P	response to external stimulus
GO:0009628	P	response to abiotic stimulus
GO:0009987	P	cellular process
GO:0009991	P	response to extracellular stimulus
GO:0010035	P	response to inorganic substance
GO:0010107	P	potassium ion import
GO:0010118	P	stomatal movement
GO:0015672	P	monovalent inorganic cation transport
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019538	P	protein metabolic process
GO:0023052	P	signaling
GO:0031667	P	response to nutrient levels
GO:0034220	P	ion transmembrane transport
GO:0036211	P	protein modification process
GO:0042221	P	response to chemical
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044424	C	intracellular part
GO:0044444	C	cytoplasmic part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051179	P	localization
GO:0051234	P	establishment of localization
GO:0051716	P	cellular response to stimulus
GO:0055085	P	transmembrane transport
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0071804	P	cellular potassium ion transport
GO:0071805	P	potassium ion transmembrane transport
GO:0071944	C	cell periphery
GO:0098655	P	cation transmembrane transport
GO:0098660	P	inorganic ion transmembrane transport
GO:0098662	P	inorganic cation transmembrane transport
GO:1901564	P	organonitrogen compound metabolic process
GO:1901700	P	response to oxygen-containing compound
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K07198	PRKAA, AMPK; 5'-AMP-activated protein kinase, catalytic alpha subunit	EC:2.7.11.11	Apelin signaling pathway	ko04371
			FoxO signaling pathway	ko04068
			PI3K-Akt signaling pathway	ko04151
			AMPK signaling pathway	ko04152
			mTOR signaling pathway	ko04150
			Autophagy - animal	ko04140
			Tight junction	ko04530
			Insulin signaling pathway	ko04910
			Glucagon signaling pathway	ko04922
			Adipocytokine signaling pathway	ko04920
			Oxytocin signaling pathway	ko04921
			Axon regeneration	ko04361
			Longevity regulating pathway	ko04211
			Longevity regulating pathway - multiple species	ko04213
			Circadian rhythm	ko04710
			Thermogenesis	ko04714

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network