result

Gene information

Detail information of g143178

Location

Gene	Chr	Start	End	Strand
g143178	Scaffold_43358:HRSCAF_426444	134136	136799	-

Sequences

CDS

Protein

Gene

>g143178.t1
ATGGGAGATCCATATACAAATCTGTTCAGAGGCATCTTTAATTATTACCCTAATTTCCAATCAAATAATAACTATTGTTATGATCAATCTCCTCTTCCTTCCTTTAACTACAATATCAATTCTCATCTCCAAACTTCGCCACCTTCACCTCCGTTAAGAGAAGCGCTTCCCCTACTTGGTACTTTGAATCCATCAAAGGATTTTCAAGAAAATGATAACACGGAAAAAGACAAGTGGGACTTATCTGAAAATAATCAGGAAGATGGTGTGGCAATTGCTCTTCATATTGGACAGCCAAACCCTAGCTATGCAGTTGACCTTATATCTAGGGTTTCTGCTTCTTCCAATAACATGCAAGCAGAAGAGTATTATTATAATACTAATATTAGCAGTAGTATTGCTGCTGAAGATGAAGAAACTACTGAGAGAGATGAAGCTGTACCTACAACTGCCATAGGAAGATTAAATAAAGGACAATATTGGATCCCAACTCCCTCTCAAATACTTATTGGCCCAACTCAGTTTTCGTGTCCTGTTTGTTGCAAAACTTTCAATAGATATAACAATATGCAGGTATTTTTATTTTAGTTGTTATTGTTGCTGTTATTTTTCTTGTTTCCCAGCTGAATTTTTACAGATTCTTTTTAACTGTTGAATTGGATTTGATGCATCAAAGTTTTTAAATTTTATTCTTCAGCTGTATTATTCCTTTTCCTTTTCCTATTTTCCTTCCACAGCAACCAAACAAAATTGATACTGAATATATCAATTTAATCAATATTTGTTTTTTCTTTTCTTTGGCAAGTATGTAAGTTTCCTCTCCCGTTTTTGTTTTATTAAATTCAACATAGAAAAAGCAAAATAGGAGTTGCAATCAAAAGTAACAAAGAAAGATTTTAACCAATTTTGCCGTTGCATAATTGGATGCAAAAAAGTGCAAATGAGTTTAACCAAGACAACGAGAAATAAAATGATTTATTTTGAGCAATATATTTAAGTTAATAATAACTAAAGGCTATTCGTGTCTTATATTGAAGATGTAAAACGAAAATGATGCAGTAAATACTATTAAAGATTCTAGACAAGCTGGTATATGTACTGTTCAGTGCTATTGAGTGTTCTTTCGTTATTGTCCATGTCACGCAAACTTGGTGACTAGAATTTCTCTTATTCAAATAATCAAGTCTTTATGAATATTTTTGACGATTTTTTTAGTATATATGAGTATAATTTTTGTATATATTCAAAATATTGTTAAATTAGAAATACCAGACTACTAGATACCTCTTCTTTTTATGTGATTTAACTGGACATAGGTAATGTTCTATTTGCTTTATGGTACTCTTGGATTTATTTATTTATATTGTGTGTGTGTTCATGCATTGACTGATGTGAGAAAAGGGGAAAATTGTATTCTGAAAAGTATTACTCAGCTTCAGAATATTGCTCAGACGATTTTTCGTTTTTATTTCGTTTCCATTTTTATTCTTTATTCGAGAAATAATTAAAGAAGCCTCTCAAAATCTTCTGCCATTACTGCACTTCAATAGTCCGGTCCCAGATCACCAGTGCACTTTGATAGCTTCATCTGTGTTTGTTTCTCTCTTTATCTCTCTTCCTCTCTCTCCTTCACTTTTCATATGACTCCTTGATTTCAACTTCTTTTACCGAAGGCAAGAATAATTTTACACGAGTGTTTGGTCTATTATTTTTTATTAAGATTGTGTTCACATTCATATTAAGAAATTAACATAATACTTGTTTTTTTATTGGTGGACTATTAATACTCGTTTATCCTTCATTGTTTTCCTCTAAAAAGGCTTACTTCAAGCAAACAATCAAACAACAAATCCCTGATTCTTCAGATACATTTTGTTTGAATTTACTGCATTTACAACAGTTGGAATATGTTGGTTATCACTTTTCCATAAAAAAAACCTACAAAGCTAAAGCTATCAAAGAAAAAGGGAAAGTTTTCTTTCTCTTTATCTTCATTAAATGTTGAATATCAATCATATTAGCAGCAGCTGGAAAATATTATTGGTTTTTTGTTATCTATCATACTACCTAGTTAGTATTATCTTACAATGTGATTTGTAATTACTGTCATTTATAAGATTAACTTCGGACATATACCCAGTACGTTTACAATCTTACCAACCCTAACATATCATAATATCACTCTAATGCATATATATGTATGCAATTTTACTTTATATATAGATGCATATGTGGGGGCACGGATCGCAATACAGAAAAGGCCCGGAATCACTAAGAGGAATACAGCCAACAGCAATGCTTCGACTTCCATGCTATTGCTGTTCTCCAGGCTGCAGAAACAATATAGATCATCCAAGATCAAAGCCACTGAAGGATTTCAGAACTCTGCAGACTCACTACAAAAGGAAGCATGGCATCAAACCATTCATGTGTAGAAAATGCGGCAAGGCCTTTGCGGTTAGAGGAGACTGGAGAACTCATGAGAAGAATTGTGGCAAGCTTTGGTACTGTATTTGTGGTTCAGATTTCAAGCATAAAAGATCACTTAAAGATCATATTAAAGCATTTGGTCAAGGGCATTCAGCTTATGGGATTAACTGTTTCGATCATGAGGAGGAAGAACCTTCTTCAGAGATTGAACAGGACTGTGATGCATCTCTATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008795700.1	1.2e-121	zinc finger protein WIP2-like
Swissprot	Q9SVY1.1	1.4e-103	WIP-domain protein 2
trEMBL	A0A8K0IPR9	9.1e-124	Zinc finger protein WIP2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G57670.1	71.37	1e-103	373	NTT;WIP2	C2H2-type zinc finger family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g143178	AT3G57670.1	255	56	4	90	331	122	372	71.37	1e-103	373
g143178	AT3G20880.1	360	128	9	1	331	65	410	52.50	6e-97	350
g143178	AT1G51220.1	330	107	8	19	331	29	337	56.06	3e-96	348

Ortholog group

Species	Genes
Allium cepa	g143178.t1; g204286.t1
Allium fistulosum	AfisC4G01382; AfisC7G01153
Allium sativum	Asa3G03954.1; Asa4G01272.1
Arabidopsis thaliana	AT1G51220.1; AT3G57670.1
Oryza sativa	LOC_Os06g40960.1; LOC_Os09g10980.1; LOC_Os09g31140.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
-	-	-	-	-	-	-

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0000902	P	cell morphogenesis
GO:0000904	P	cell morphogenesis involved in differentiation
GO:0008152	P	metabolic process
GO:0016049	P	cell growth
GO:0001709	P	cell fate determination
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0040007	P	growth
GO:0007275	P	multicellular organism development
GO:0009653	P	anatomical structure morphogenesis
GO:0008150	P	biological_process
GO:0009058	P	biosynthetic process
GO:0009791	P	post-embryonic development
GO:0009812	P	flavonoid metabolic process
GO:0009813	P	flavonoid biosynthetic process
GO:0009826	P	unidimensional cell growth
GO:0009856	P	pollination
GO:0009860	P	pollen tube growth
GO:0009889	P	regulation of biosynthetic process
GO:0009908	P	flower development
GO:0009932	P	cell tip growth
GO:0009987	P	cellular process
GO:0010154	P	fruit development
GO:0010468	P	regulation of gene expression
GO:0010500	P	transmitting tissue development
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0016043	P	cellular component organization
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022414	P	reproductive process
GO:0030154	P	cell differentiation
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0032989	P	cellular component morphogenesis
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0044706	P	multi-multicellular organism process
GO:0045165	P	cell fate commitment
GO:0048367	P	shoot system development
GO:0048438	P	floral whorl development
GO:0048467	P	gynoecium development
GO:0048468	P	cell development
GO:0048588	P	developmental cell growth
GO:0048589	P	developmental growth
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048856	P	anatomical structure development
GO:0048868	P	pollen tube development
GO:0048869	P	cellular developmental process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051704	P	multi-organism process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0060560	P	developmental growth involved in morphogenesis
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0071840	P	cellular component organization or biogenesis
GO:0080090	P	regulation of primary metabolic process
GO:0090567	P	reproductive shoot system development
GO:1901576	P	organic substance biosynthetic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1990058	P	fruit replum development
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network