result

Gene information

Detail information of g144339

Location

Gene	Chr	Start	End	Strand
g144339	Scaffold_43493:HRSCAF_426579	136245	138471	-

Sequences

CDS

Protein

Gene

>g144339.t1
ATGACAATGAAAGATTTTGACATGAACAAGCCAGCTCCTGAGGTAGAAGAAGCAGCCTTTTCATCTGGCAGTAATGAAGATGAAGACATCATCAGTGAAGATGAAGCAAGCACACAAAGCAGGAAGAAAAAGCTTCAGCTCTCCAAAGAACAGAGCAGTCTACTTGAAGAAAGCTTCAAACTGAGCCCAGTTCCTAGCCATGTAAGATTTTACATTTATCATATATTCTTTACCCTAACAATATGTATTCATATAGCTTTAGTATCGGTACAAAACTATCAAATGGCGTTCTGCATATAGCCCAGAAATTTTTTTTGTTCGATTATAAAGGAAATCCCTTTATATGTTAAAAGTATAGTTTTGGACACATATGTACACATACATACACAAGAACGCAGAACATAGACTTCAGTTACAAGATTATATTGTTTTGGTGATAACCAATGTTAAATTAATACTATGATTAATTTAGGATAAAAAGGAAGAACTGGCCTCAAAGTTGAATCTGACCACAAAGCAAGTGAATGTATGGTTTCAGAACCGAAGGGCAAGGTTAGTACTTAATTTCAGATCTCAGTTTATGATTATTTTCGTATATACTATTTATTTATGAGTAGCATGGCCATTTGTTTAAGCATAAGGGTTTTAACACAATAACTTATCAATGTACCTTCAGATTAAACTGATTAAGTGGACTCCATGAATGTGTGACACTTCATATATTATTTTTAAAATACTGTATTGGCAATTTGATCAATAAACGGTTTTCAAAATTTACATAAAAACAAGTAATACATATACTACCTGTAAGGATTGTTATTCTACACTAGTATTGCCTTTACAACTAGGTTAAGAAAACATGATTATATAACAGAAAATTGTTGAGTTAATACTATTAAGTCTAAATATTAATGTGGCTATCTTACAAAATATTTCCTACTATATAAGAAGAAAACAATTCATGGTTGTTAAATGGAACAACAATTCGGATAAAAGTCAGTATTGACTAATGGAATTACCTTCTAGAAAATAATATTACTAAAATTATGTAAAATTATACTGTATAAAAATGAATATTATGCTATAAAAATAAATAAAAAATTTGATTTGATGGTAAAGAATACACTTTAAACAATTTTTAATTTCGAGTCTCAAAACTACCATATTTTTAAAACGTTTAGTTTTTGAATAGTCAACACTTTCAAATAATTAAATTTATTAAATTTGACTTTATCAGATCTTTAAGTTTTAAACAATGAACTCAATAATAAAACCAAATTTTTACTTAATTTTTTTGAAGAATAAATATAATTTATATATGATAGAGTGCATCATTTGTAAAGATAACTCTCTATGTTTGTGCAATTTTGTACAATATTATAGCAGCATAACTTAAATTCACTGTTCGTCTTATTACAAAAGTAAAGTTAGGATAAAAACTTGTTATAAAGATTCCTTTATTCCTATTCCTTCTTACCTTCAATAAATGAATCTTTAATGGCTATGGTAAACATTACTCAGATTTATTTTCTGCCATATCTCCCAAAATATAATCAACGAGAGGGTGTGGTGTCAAACACTTATTTCTTCTGTCCTCTTTATCTTTGACAAACTTCTTTGTTTATTGGTCTCTTAAATCATATTTATGTTGTAAATTTTGTATTTGCTAGTTGGTACTCGCATCCTAAATGGAAATTAGTTCACTGACATTAACATTGTCCAATGCTGAAAGATTAATTTCTTTTCATACTTACTCATATTCACTTCAAACATGAGAGGTACAATATGCAACATGTACATATATTCCAAAAACTTGAAGTTAAAAATTCCAATATTTTACCACCTTTATTAATAGTAGATGTATAATAAAGAATAGCCGTTTGCTGTTTGGATGAGGTAAAGAGGTAACAATTGCCTTTCAAGTATTACTTTATTTCTGTCCAAAGATGTTTTCCCACTGTGTATATGTCCAAATATTTTGAAAATTATGTAGTAAAAGTAATGTAATTTCAGGATAAAGCAAAAGCAAATTGAAGATGAATACCAGTATCTGAAAAAGAGCTACATCTCTTTGAAACAAGAAAATCAAAGATTGCAGTTGGAATTGGAAGAACAACGTGCACTTCGCTTGTTTCATAAGTCCACTTTTACATCTTTGCCAGCAATGTGCGCGAGGTGTCAATGCATTGTTACCCACAATGCAGGAAACAGTGATGGTGGTAGTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	PKA55517.1	6.2e-23	Homeobox-leucine zipper protein HOX3
Swissprot	Q0JKX1.1	2.1e-20	Homeodomain transcription factor HOX3
trEMBL	A0A2I0AIY9	4.4e-23	Homeobox-leucine zipper protein HOX3

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G70920.1	44.37	4e-26	114	ATHB18;HB18	homeobox-leucine zipper protein 18

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g144339	AT1G70920.1	151	78	2	3	153	31	175	44.37	4e-26	114
g144339	AT3G60390.1	143	68	4	14	150	135	273	45.45	2e-22	101
g144339	AT5G06710.1	148	67	5	14	157	168	307	46.62	3e-22	100

Ortholog group

Species	Genes
Allium cepa	g144339.t1
Allium fistulosum	AfisC6G04246; AfisC8G02763
Allium sativum
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	41	97	64.1	6.9e-18

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0001067	F	regulatory region nucleic acid binding
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006950	P	response to stress
GO:0006970	P	response to osmotic stress
GO:0008150	P	biological_process
GO:0009628	P	response to abiotic stimulus
GO:0009651	P	response to salt stress
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043565	F	sequence-specific DNA binding
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network