result

Gene information

Detail information of g144450

Location

Gene	Chr	Start	End	Strand
g144450	CHR4	29001044	29003413	+

Sequences

CDS

>g144450.t1
ATGAAAGCCGGATTGGTTCTGCCATGGAGCAAACCAAACCTAGCAATCCATAGCATAATACATAACAAAAAAAAAATGGCGGTAAACTACTGGGGGTTAACAGCAAAGCACTGCGCCAATTGCGTCTCATCTCCTGCCGTCATGTACTGTAGAACCGACGCCACCTACCTCTGCAGCACGTGCGAAGCGCGATCCCACTCGTCGCACGTGCGCGTGTGGCTGTGCGAGGTCTGCGAGCAGGCGCCGGCGGCTGTGACGTGCAAGGCCGACGCGGCGACGCTGTGCGTTACGTGCGACGCGGACATCCACGCTGCGAACCCACTGGCTAGGAGGCACGAACGGGTGCCAGTGGTACCGGTGGGGAATCCGACGGTGCAGGTTAAGGAGGATCTGTTTGGCGAAGATGGAGAAGGTGACACGTGGAAGGGGATGATGGTGGATTTGAACTGCTTTGGTGGATTCAGCAACGAATTAGTGGATCCGTATTTGGATTTGGATGGTAATGGGGATGGATTGGTGCCTGTCCAGGAGAAGCATGTTTATGGGTACGGGTATAGGCAGGAGAAAGGGACGATGATGCCAAAAGGGACGGTGGATATTGATTTTGGAGCTGTTGGGAAAGGGGATGGGTATGGTTGTGGCCATGGTGGATATACAGTTGGAGTTCAGTCCATGAGCCATAGTACTACTGTATCTTCATCAGAAGCTGGAGTCGTGCCAGATAATAGCAGCTCCATGGCAGTAGCTGATGTATCCAACCCGTACAGCAGACCTTTGCCAAATCCAATGGATGCAATGGACAGAGAAGCAAGAGTTATGCGATACAGAGAGAAGCGAAAGAATAGAAAGTTTGAGAAGACCATACGCTACGCTTCCAGAAAGGCCTACGCAGAGACTCGGCCCAGGATTAAAGGAAGGTTCGCCAAACGGGTCGACAACGATTCTTATGCGGATCCAATGCACTCAGTGATTAATGCCTCCACTGCTTTCATGAATGACAGCGGGTATGGGGTTGTCCCATCCTTTTGA

Protein

Gene

>g144450.t1
ATGAAAGCCGGATTGGTTCTGCCATGGAGCGTACCAAAATCATTCTTTTGAGGAGCGCATGAATAATTACTAATTTTAAGTGGAGCAATTTAACTATTCAAAGGCTTTTGACTATTTTATCAGCAATAGCACATATATCAACTTTTCAATACAAAAATATATTGTATGGTTTACAGGCATATGAAAGCTACAACAGCTATCTCTATCCGTATCCATTTACCGAGTTGTTGATTATCCTAACAATCATGGACTCAAAATGCCTTTCAAATCCGAGTCAATTTAATATTGTTTTATTTCCCCTTCACCGAAGGCCAACCTCCAATCCCTAATCATCTTGGCTCCTCAAATCAAAAACCGCCATCTGTCCACTGAAAATCCAAATTTTCTATTTTAAGAAATAAATATTTATCCGTGGCTTCTAGGTCTCCACGTCACCCCTTTTGCTCCCGTCACCTCCATTAACTTCGCCTTTCTTCCCTCAAATAGAAGTTAGAAACCAAACCTAGCAATCCATAGCATAATACATAACAAAAAAAAAATGGCGGTAAACTACTGGGGGTTAACAGCAAAGCACTGCGCCAATTGCGTCTCATCTCCTGCCGTCATGTACTGTAGAACCGACGCCACCTACCTCTGCAGCACGTGCGAAGCGCGATCCCACTCGTCGCACGTGCGCGTGTGGCTGTGCGAGGTCTGCGAGCAGGCGCCGGCGGCTGTGACGTGCAAGGCCGACGCGGCGACGCTGTGCGTTACGTGCGACGCGGACATCCACGCTGCGAACCCACTGGCTAGGAGGCACGAACGGGTGCCAGTGGTACCGGTGGGGAATCCGACGGTGCAGGTTAAGGAGGATCTGTTTGGCGAAGATGGAGAAGGTGACACGTGGAAGGGGATGATGGTGGATTTGAACTGCTTTGGTGGATTCAGCAACGAATTAGTGGATCCGTATTTGGATTTGGATGGTAATGGGGATGGATTGGTGCCTGTCCAGGAGAAGCATGTTTATGGGTACGGGTATAGGCAGGAGAAAGGGACGATGATGCCAAAAGGGACGGTGGATATTGATTTTGGAGCTGTTGGGAAAGGGGATGGGTATGGTTGTGGCCATGGTGGATATACAGTTGGAGTTCAGTCCATGAGCCATAGTACTACTGTAAGTTTATATATATACTAGAATAATTACTCTTTTCTTTTCTTTTTTAATCATCTTGAAGTATACATAGCTTTACTGCTCTAGCAACAAATAATATTTTCAAATTCGCACGTTATTTTACTATAAATTTTTTGAAGTAAAATTGGCTAATCATGAGCTATCTCCTGCGTCTACTTTATATGATGTCCTTTTGAGTTCATGATTAATAATTTATAATTGATTTATCAGCAAAACTGAAAAGATAGTTAGTAGTGGAAAGTGAAAACAATAACTCAATTCGGAGTAGGAAACTTCCTTCTTAATTTTGCATCAAAAAATTTCCTCAAAGCGTGAATGATATGATCTTTTTTGGCCACTACTAAAAGTGGCTTACTTTTCTACTTAATGATAAAGAAACATTCCTTTTAAAAATTAGCAACCACGCTTTTAAATTTCTTAAATTAAATCGTTCTATTGTTAAAAAAGTTGCCAAATGCACCGAATCATTGTATATCTTAGGCCTACTGGTTCAATTACCTCTTCATAAGACTCCCATCAAGTGCCACTTCCGCTAGAATTTCACAGTTACATATGAGATTGAAAGTATACTTTTGTTCACTCGCTTTAAATTTAGTATTTGTTTTTCTCCTTTTTCACGGGATTTCTGAGTTACACATATGTTTACTTTACAAAATTCAGCATTAGAACTTCAAGTTGCATCCTGGTGACTCTTTTGCTGTATTTATTTTCTAAATAGAAATTAATGTAGTTAGAACATTTCTTATTTTGCTACGGTGTTAATATTTTTAGACATATGATGATAGGCATAATCAGTACTAGATTCTTAAATAATGCATTTCCATACATAGAACTCATAAAGTTTTTTGCATGTATAATAGGTATCTTCATCAGAAGCTGGAGTCGTGCCAGATAATAGCAGCTCCATGGCAGTAGCTGATGTATCCAACCCGTACAGCAGACCTTTGCCAAATCCAATGGATGCAATGGACAGAGAAGCAAGAGTTATGCGATACAGAGAGAAGCGAAAGAATAGAAAGTTTGAGAAGACCATACGCTACGCTTCCAGAAAGGCCTACGCAGAGACTCGGCCCAGGATTAAAGGAAGGTTCGCCAAACGGGTCGACAACGATTCTTATGCGGATCCAATGCACTCAGTGATTAATGCCTCCACTGCTTTCATGAATGACAGCGGGTATGGGGTTGTCCCATCCTTTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	ACT22759.1	7.2e-159	CONSTANS-like protein
Swissprot	Q9FHH8.2	2.8e-30	Zinc finger protein CONSTANS-LIKE 5
trEMBL	C7E143	5.2e-159	CONSTANS-like protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G24930.1	42.38	6e-60	228	ATCOL4;BBX5;COL4	CONSTANS-like 4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g144450	AT5G24930.1	387	121	13	33	342	45	406	42.38	6e-60	228
g144450	AT3G02380.1	368	158	9	25	342	3	347	37.23	4e-56	215
g144450	AT5G57660.1	357	153	8	31	342	15	355	40.06	2e-55	213

Ortholog group

Species	Genes
Allium cepa	g144450.t1; g204998.t1; g205024.t1
Allium fistulosum	AfisC2G08167; AfisC4G02056; AfisC4G05935
Allium sativum	Asa5G04961.1; Asa5G04962.1
Arabidopsis thaliana	AT3G02380.1; AT5G15840.1; AT5G15850.1; AT5G24930.1; AT5G57660.1
Oryza sativa	LOC_Os02g08150.1; LOC_Os02g39710.1; LOC_Os04g42020.1; LOC_Os06g16370.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00643.21	zf-B_box	Domain	36	71	27.4	2.5e-06
PF00643.21	zf-B_box	Domain	72	117	26.3	5.4e-06
PF06203.11	CCT	Motif	268	310	65.5	2.9e-18

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network