result

Gene information

Detail information of g146559

Location

Gene	Chr	Start	End	Strand
g146559	Scaffold_43822:HRSCAF_426908	166220	168331	+

Sequences

CDS

Protein

Gene

>g146559.t1
ATGCATGAACGATTTTATGCGCACCAGCCAAGACTCACACCTGTTCAAGCTTGCATCCATTCTCGCCGTGGGGTAAGCTACGTGCATGAACTTTTGTTAAGTGGTAAACACTCTAAATGTTTCAATGCATCACACAATTTGGACATACATTGGATTCGAACTGCACTTAATCAATATTGGTAATCAATAAATTAGTCCTCATGATCATGAATTTTCGTTACTAACAGTCCGACATTATCAAAAAACTACTATATTTTAATTTATGAGAAATTTCCAATATATATGCATGGAAATATTGTAAATTTATCAGTGCTAAAATAACTGATTAATTAATAACATGTTAAAAAACAAACATGTATTATATTATATGTAGTATAGTATGTGAGCTTGATTCCTAGCGATTTTACTGCTGAATTAGATGCAATTCGAAATGTTGTCCTCAGTAAGAGTTTGGGTTTTTTTGTCTTTGGTTGGTGTGTGGAGGGGGAGGGGGCTGGGTGTGGGGATTGTGGATCATTTAACGCAACCGTATTATTCCACTTACCAACACTGATTTCAGTACTTTAATTAGACTGCTCCTTTGAGGGGCATGTCCGGGTGTCCCTATTGTATCTGCTCACCTACAATCACAACCCTGCTAAGAACCTGTCATCCCACGTCATTTAATTACATACAGGTGCATATTTATATGCTCGTACAAATTTCACACGATAAGTGTTCCAAGAAGAAAAATTTTTGGTCTGCTTTATATGCTAAATTCTATTGTGTTTCAGACGCTCTTGCTAGAAGTTGTTCAGAAAGATGACACAGGGCTTTGCAGTTTGGTTGTTAGTGCCAATAGCAGCTATAAATCACTCTCTGGTATGGTAAATGCAAGTTTTTTGAGTTAGCCATAACTCTCTTATTAATGCACTGAATTCCATTGTCATTTTCCCTTTGTCATATATACTTATGTTGTTTCCAGTAATATTTTTCTTCTATTTTTTGCAATTTTTTTCGCTCATGTCCATGTTTATCAAGCAAAACGTTATTGTTATGCGACATTATTTACAATTGATATATTGCTGTTATAAGCTAAGTTCTTGATAACTGTTTTGAGTTCTGTATAATTTTCATATAAGCTAAGGTAAGAGGGTGGAAAGTGAAATATTTATGTTTGATGTTTCATATACCATATTTGTCATTAGTTTACTGAATATTTGCAGAGGAAAAAACCGAGCACCCTCTTGCCTCAGCTAAGCATTTAAATAATGAAACTGAAAGAGATACAGAAGTACAGAAGTCAAACAATGATAGACTAGGTGGATCTCAAATAGACAAACCAAAAGCAGAAGAATCCAGATCAGGCAATGAGGACGGTGATGTGCAGACAGAGAGTAAACCTGTATCACCTGAAACACTTGCATTGATGTGCGATGATGAAGACACAATGTTCATTGCTTTTAGAAACCCTAGTCCATCCCCAAAATTGCAAGAAAATCTATCAGAGCAATATGTGGAACAGGAAAGGAGTGTGTTGATAACTTTTCGTGATTGTCTTCTGAAATTAATCAACTATGCTGCAACAAAAGGTACCGATTCACTATCAATGTTCATACCTCCTTTATTCCTCACAAACTATTATATCATTGTTAGACTTATATATAACATATAGACTGAGGATTAAGAACAAAATATCAGTTGATATAGAAAATAATCAGAAAAGCATGAACATTCTTGTGCCACTGCATGGTCGAACAGTAGCAGACTGCTATGTGTATCATCCAAATAAAGTCTAATTCTTAATTCTCTTTATGGTGCTTTATAGAAGCGAAGTACGCATCAATGACGATGAGGTCTGAGCCACATACTTATCAAAGTTTAGTAACAAACGACGTTACAAGGGTTATGACAATGTGGTTGAAGATACCACCTACTTATCAAGCCTCCATAACTAATGGCATTACACGAGTTACACAATCTAGTGCTGTACGGGTGTCTCAAACTCAGACCGTGGATGGAATTCATGATTCGTTTGATAATCACTCGCCTTATAACATCAAAATAAATTCAGTAAATTGTGGTGAAATTCCAAGTAAGCAGAACTCTATAGCACAAGGGAAATCGCAGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020263972.1	1.0e-25	protein tesmin/TSO1-like CXC 5, partial
Swissprot	Q9SZD1.1	2.5e-13	Protein tesmin/TSO1-like CXC 5
trEMBL	A0A5P1EV71	7.2e-26	CRC domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G29000.1	33.18	2e-17	86.7		Tesmin/TSO1-like CXC domain-containing protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g146559	AT4G29000.1	223	105	9	25	223	357	559	33.18	2e-17	86.7
g146559	AT2G20110.1	222	118	11	25	226	336	539	29.73	3e-14	75.9
g146559	AT2G20110.2	229	124	13	25	241	336	541	30.57	4e-13	72.0

Ortholog group

Species	Genes
Allium cepa	g146559.t1; g222487.t1; g331509.t1; g454037.t1; g4569.t1; g493495.t1
Allium fistulosum	AfisC4G01515; AfisC4G01518; AfisC6G04123
Allium sativum	Asa4G01357.1; Asa8G02952.1
Arabidopsis thaliana	AT2G20110.1; AT2G20110.2; AT4G29000.1
Oryza sativa	LOC_Os01g55580.1; LOC_Os01g55580.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
-	-	-	-	-	-	-

Gene Ontology

Accession	Ontology	Name
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K21776	LIN54; protein lin-54	EC:-	Cellular senescence	ko04218

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network