result

Gene information

Detail information of g148945

Location

Gene	Chr	Start	End	Strand
g148945	Scaffold_44086:HRSCAF_427172	1100524	1107527	+

Sequences

CDS

Protein

Gene

>g148945.t1
ATGCTCCACCAATCAGACACTGCCACGTCATCGTCTTCTCTTTTTCAAGTCCCCGACCTGGTCCGCACCAATCTGCTACGTAAGATCTCCTCGGAAGGCGGATTCTCTTACGTCACGTCTATCGCGACGGCGGTGATTTCAGACGACCTGCGAGCGGCGGAGGCGGCAAGGGAGATGGCGTGGGAGCAGCTTCACTCGGGTCCGTGGAACGAGGTAGGGCCCGTATGGAGAGACGCGTATGCCATGGCGTGCTTGTACGTTGCGGGCATTAGGGCTAAGAGCGGTGACTTGGACGAGACGATGAAGATTTTGGATTTGGGGGTGATTATGGGTGGGGGGATGTTGAGGAAGGAACTTGATGATGCAATCGATTGGGTTAGGAAGGCTAAAAATGAGAACTTTGATGAAGGCGATATTTCTTTTGGGTGTGTAGATAAGCTGGATTTGCAAAAGGTGAACTTGTTTTATTCTAGTTTTTCTAGGTCTGGGATGCAATGTGACTTAGCAGCGTATCATAATTATTACTATGTATATATATATATTGAAACTGTGAACATTTTTAAAATCGTAATCACCATTTACTCTTGCTCTAATATTATAGATTTGAACTTTATTAGGTTAGAAAGAATCATATTTTTTAAGATCTACTGAATAGTCAGTGTCTTCGGTGGGAAAATAATCAAACCAACCGTTAAAATGTTTGTCTAGGCTTCCAAAACCAAATCATATGAAGTCAGAAAAACAAGAAACATCTCTTTTAATCTCTTCAATTCTATTTGCTTTGTTCTTTCCACTAATGTCTCCTTAAATCTCTTTAATTCTTAAATTTTTCTAATCTATTATTATTTTTGTTTAACTAAAATTAAAGAAAAACCACAATAATTTTTTTTAATTATGTTATAGAACGGTCGGTTTCCACCGTCATACGATTGTACTGGCAACTTCCATCATTTCGCACAAGATTTGAGAATCCTAACTTCTGAGTGAAAAACAACACACTTTATTTTTCTGTATTTACAAAACAATATCCAGCATACATTTCTAAAGGTATGGATAAAGTTAATATTATAATTGTTGGGGGTTTCCTCAGTAGGGGGTCGCCCTAAATGAAGGCCTAACTTGTCCATGCCACGGAAATGAATAATCGTTGTGGCGGTGAGGGGATGGGATATCTAAATAATAAATATACTCAGGATTTTGTACATGCAAATGAATGATCAGTTTATCTGTGCTTACATAACATCATTTTAGGTACTTCAAATTCTGCCAAAAAGATCATTGTCTTGTAACACCGTTGAGAAGAAATCGTCAATGTCACTAGAGACTTTTATTTCTGATTATTTCTTGAGAAGCTTGCCGGTTATAATAACCGATTGCATTGAAGATTGGCCTGCAAGAACAAAATGGAAGGATATCGAATATCTCAAAAAAATTGCAGGAAATCGAACTGTTCCTGTTGAGGTGATCAATGTTTTTTCTTAGTTTGAAATAATTTTTCTTCGATCATGTATGTGGTTATCCACATATTCATAAATCATAACCCATGTCAATTTGTCGTTTTTTCCCTCCTAGAATTTAAATATCATTCATATGCAGTTACTCAAGTTGCAATGACTATAAACATAATGCAGGCGTTAAAGAGTATGATACTGTCCAATTTTATTTGAAATATCACTGGGATGATAAGAGCAAACTTCTGTCACAATATTTCTTTTTACTTTCTCAGCAGCTTAATATTTTGATTATACAAAAGCTATGTAGTTAACATTGATATCCACCAAATAGTGTTTAACCACCAGTATGTCATATTTGAAAAATATTCAAATATATTGGAATAAAATTGGTTCTTCCTTAGTAAACTATTTTTGCTCTTAGTTATGGAAACATATCATAAGTTATTTTAACAGATGCTATGTAAAAATAAAATCGAATGTTTCATTACTGTTACAATTCAATTATGTTATGAAAAATAAAATTGCATTTTCACCCAAATATTCAAGGTACAACATAGAAAGTTGAAGAATAGAATTCAAAATGAAAATTCACAATTATCACAACAATATATAATTTAATAAAATTCAATAATGTTTCTCTATTAGAAGAGATACAAATGCCAGCGAAGTGTTCCAATTTGTCCTTAATTTTATATTTCAAAGTTCGATTAATCTTGGTAAACTGCTTTAGAATTTCTAACTTCCGACATCGAGTATGAACAATTTCAACATTAAAAAATAAATTTCGAGATGATATGACAAGTTACAATTTTGACCTTAACATATTTTCAAACAAAATAGTTTGTTCGTTTTAGAACTTTTGAACATGCTTTTATTTTTCTTTTTTTCTTTTTGTGGAAAATGGACATATATAAGTGTATATCACAAAAAAGCTTATATCTGTTTTTGAAAAAAGACCTTACACAATCAGGATAGATTATAAAGTTAAACAGCTTAACTTTTCGTAAAGTATAAATGCCAGCGGTTAACATTGTAAGTGTATATATCTGTTTGTTTATAAGAACAAAAAAGCTTGAGATTTATCGTGTAAAGATTCTTAGATTGTTTTTCTCATTTTCCTCGATATTCTGATGGCAGCCCTTTTTATTATTAGTTACCATTGAAGACCTTACGCGTACTTGGCTACCGTAAGCTGCTTTTCCTTCCAAGAATATATTACTATATCATCTATCATATGTCTCGTTTTAGTTTTATTACTATTTTAAGCCGGCAAGTTTGCAACATTCAGGTTGGGAAGAACTACCTTGCATCAGATTGGAAGCAAGAGCTCGTCACCTTTTCACAATTTCTGGAGAGAACAAAATCCATTGAATCCTCTTCAAACCTCACATATCTTGCTCAGCATCCCCTGTTTGATCAGGTATCTCCGCGTCATTATTCATTCCTAGCCATTCTTCATATCAGATTCACCTTATTTGTTACAATTAAAATGGCCAGATTCAAGAACTTCAGAATGACATAATGATACCTGATTATTGTTATGCTGGTGGTGGACAACTCCAGTCTCTTAATGCTTGGTTTGGCCCAGTAGGTACTGTGACACCATTGCACCATGATCCACATCACAATATGTTTGCTCAGGTAAGGAAATAAGAACAAATAAGAAATTTTACTTTTTTGAATTCTGTCAAGTTCCAAGTGAAATAGCACGCATTATGCATTTGGAACTCATACGACTGGCAGTATGATATCACATACTTCTTCATAACTTAGAATATCTTGTAGATTTGCTGTGAAGAAATGTAGATAAATTGAGCTCAGGGAAGATAAGTTCCACTACCCTGCTTAATCAAAACAGGAGGAGATCCTCCAAAATCTTGGTTGTTTTTGACTGGCAACTCTAGTCGAGTATAATTTTCTCTATGATGTTCAATTAAGTTGTTTAATATCTCATGGTAGGGGTTTTCTCCATAGGATTGTTTTTTATGTATACTTGCTATAAATAAATTCATTCTCCTTTAGCAGTAGACTAATAACTTCTGTCTTGTAATGAAATAATAAATTTCAGTTCTATAAAAAAAAATATTACAATAACCTGTTTCCTGATTCAGTGGCCAGCTCTTAAGCTAAGCACTTGAGCACATCTATGAATAACCAACCCCATCTGGACAAATGAATCAAGTGATAGTGTATCTTTAGCCCGTTCATCCAATTTCCTATATATAAAAAAAGACATTTGCTTGCTAAAGAATCAAGGAAATTGGATTGGCATGCCAGCATATTATCTTGTACATGTGATTCCTGGAACAAATGACAGTCTTGTGGGTTTTGTATGATAGTTGGGGTTCATTGGCTCAGGAGGTTAGTTTAACGCCTGACCTAACAGGATCAGTAAAAATAAAAGCAAGCAAAGCAACAAAAGCCTTCCCACATATGCTATTCTCACGTACTTGAAAATGCTACTCTACTCTCTGCCATTTGTTATCCATTTTTCTAGCAACGATTGGATCTGAGTAGGACGAGCGCAAGTTTTATACGACAATGTAACAATGAATTATTAGGCAACCTTGAATATGCAAAAATAACATATACAAGAACTATTTTGGTTGTCTGTCAGGCATCATCAAAAGAATGATGTAAAATTGATGAGTCTGTGGGTTCCACTAAAGCTGAATGGGGTATATTTTTGGTTCGAAAACTATCCAGCCTTTGAATTGCATTAATAATGTATTTGTAGGTTGTTGGTCGAAAATACATAAGGCTTTATCCAGCTACGGTTTCTGAAGACTTGTACCCTCATACCGAGTCTATGTTAAGCAACTCTAGCCAGGTATGTACTCATACTATACTATAAAGGACTAGGGCTAATTTGGAAATCAATTTTGCAAAACAGGCTATTTTGAAACTTATTATCAAAACATGTCAGTTTCAGGCTAGTTAGCAGTCAAGTCAGCATATTTTGTAACTGTTTGGAAATTGAGCAACTATGAGTTGTGCTTTTGAAAAAATATTCTAGCACGACTTTGAGTTGCGCTCCAACATATGTATTTTTTTTTAAGAAAAAAACTCATCTTTGTATATGCACAACTCATACTCGCGCATTAAAATTTTCTTCTAATTGCGCAACTCATAGTCACACTAATGTCAGACAGTTAAAAGAATGCTGAGTTGGCTGCTGACTGGACTGAAACTGACCTATTTTGATAATAAGTTTCAAAAGTAGCATGTTTTGCAAAACTGATGCCTAATTGAAAATTTGTCCTACTATAAGTGCATGTCAAATCTTTTGCTTTATTAATGTTCTTTGGCTTCTGTTTGATCTCATCGACCATATGGTACATATAAAAAGCACACTGTTATTAACTAGCCTCACATGATTCCTATGGCACTAAAAATTAGTGATATTGAAAATTTTAAAAATGGCAAAATCTGTATATGATTTGTCTTTTTCTGCAGCTGTGTATTAAGGTTAATAAGTTCCACTCTATATTAAGGTTAACAAAATGTGACCTATATCAAGATACGGGTTGGCTCCACCATTGATAATAGGCAGTCAACGGAGACAAACAGATACACTTTATATCAATATTCAAAATCATTTTCAAATTTCAGAATTATTTCTCAATTGTTATATTTGGAATAAAAATAGAAGTTAATAGTTCAACATAAAAATAATAAGTACTAATGCTTAAAAAATTGCAAAAAATAATAAATACGCTAATAAGAAAAATTCTTGGGAAGATTTGTAAAACGCTCTCTTTAAGTTTCAAAATACATAGTCGTCCCCTTTCAAAAACATGTTATGAAAAACCCTCGCCTCCTCCTAAACACATGTTACAAAAAAAACCCATATTTTTTACTTTTAGAATATTTGCGGAAAAATCTGCAAATATTTGAAATCTATGCGAATTCTGCAACTATTTGTATATTTTTCTGCAAATATTTGCAGTTTTTTATAAAAAATGTTTTGATCATACCAATACGCAATTATCATTCAAATTTAATTTCCGACAAAAAATGATTAATTTTAAACGGAAATTAAAAATAAAGATGTAATTTAAGACATGTTTTAGGAAAAGATTTTTCACATATTAATTTAAAAAATAAGGGACGAAACCAAATCTTCGCAAAATATAAGTACTAAAATTTGTACAACTGCAAAAAGTAATTAATATGCTGGTAAAAAAATACTTTTAAGCGGCGAATTCACATCTATATTTATATCAAGATTAGAGGTTTAGACCGAAGCACCGAAATTTCCGTCGTTCTGTTCCAGTTTCAGCAAGGATCGAAACCAAATCAAACCGAACCTTCGATTCATTTATGTGTATAAACTATTGAATTCAAATTTTATATAAGAAAATAATAAAAAATTAATTTGAGTTTTAAATATATTAACATTCAAAATCCGAAATTTTATTGTTGGAAAACATGCAAAATCATAAAATAGATGAATAATGTAGCTAATAAAGTTAAGTATGAAGTGATAAATAAATATTTGTTATTATAAATATTTGTAACTAATCAATTTTTTTTTTTCAATGAACGATAAACTCCTCGTCTTATTTTAATTAGTTAGACAAATATTGTGTAATTATTTAGAAAATAAATAATGAAATCTAAAAACGAAACTTAATAGAATTTACGAATTATATCGAAATTCCCGAAATTACTGAAGACCGATAACGAAAATGAGATTTCAAACCTTGTTCATATACATGTAACATAAGCTAATACATTGATAAAAGGGCAAAATATCAACCTTTTGCTATACTAAAATACACATAATATAAATTTTAATCTAGATAAAAACCAGATGAATAATTGTCTATTATTGATACCATCATATTCACATCCGCGTCCATTTTTCTGAATACTTGTTATTTCTTCATGTTTTGGATGTGGCCAAGTTTGATTTAAATTTTTTTCTAGGTATCTATTGACATACATGATGATCAATAATATAATAATATACGTGTACATACTAAATATATGTAGCTATCATGTCATTTCTTTTGTATCCATCATTTTAACTCATTATCCTTTTCGCACTGATTATAAGAAGGAAAATAAAATTACTATTGCAGTTACATTATAAGACACTTTCAATGGAAAAGAGATGGCTTAATAAGCATTGAACTTTGATTTGTCATGGTTAATTTGTGTAAGAAAGGGACATTATGCTTTTATAAATTCCATCCATCAAGATATTATTATAGTTGCCTTAGCCAAATGTTACTTACTTGCACATGGTATTAATTTCGTAATGTGAAAAATGTAGTTACATGTACATGGTTTATATCATACTGAATTAGAGTGTTACATGAAATATTATGTTTATATCAAATGTGTATTCAGGTCGACCTGGACGATTACAAAGCCGATGAATTTCCAAAAGCAGAGAATTTGGAGTTTGTAGACTGTGTATTGGAGGAAGGAGAAATGCTTTACATTCCGCCCAAATGGTGGCATTATGTGAGGTCACTTTCCCTTAGTTTTTCTGTCAGTTTTTGGTGGAGTGCTGCTGGATTTCTTCCTGTGGTGAACTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010928456.1	3.6e-157	lysine-specific demethylase JMJ30 isoform X1
Swissprot	Q8RWR1.1	2.0e-136	Jumonji domain-containing protein 5
trEMBL	A0A6I9RL37	2.6e-157	lysine-specific demethylase JMJ30 isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G20810.1	60.93	3e-142	501	JMJ30;JMJD5	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g148945	AT3G20810.1	389	142	4	19	398	23	410	60.93	3e-142	501
g148945	AT3G20810.2	400	141	5	19	398	23	421	59.50	3e-140	494
g148945	AT3G20810.3	376	139	4	19	385	23	397	60.37	2e-135	479

Ortholog group

Species	Genes
Allium cepa	g148945.t1
Allium fistulosum	AfisC4G01376
Allium sativum	Asa4G01269.1
Arabidopsis thaliana	AT3G20810.1; AT3G20810.2; AT3G20810.3
Oryza sativa	LOC_Os09g31380.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13621.3	Cupin_8	Domain	176	398	168.1	2.8e-49

Gene Ontology

Accession	Ontology	Name
GO:0051276	P	chromosome organization
GO:0000086	P	G2/M transition of mitotic cell cycle
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0000278	P	mitotic cell cycle
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003682	F	chromatin binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003824	F	catalytic activity
GO:0005829	C	cytosol
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0005654	C	nucleoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0055114	P	oxidation-reduction process
GO:0016491	F	oxidoreductase activity
GO:0016570	P	histone modification
GO:0006325	P	chromatin organization
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006464	P	cellular protein modification process
GO:0006479	P	protein methylation
GO:0006482	P	protein demethylation
GO:0006807	P	nitrogen compound metabolic process
GO:0006996	P	organelle organization
GO:0007049	P	cell cycle
GO:0044772	P	mitotic cell cycle phase transition
GO:0007623	P	circadian rhythm
GO:0008150	P	biological_process
GO:0008168	F	methyltransferase activity
GO:0008170	F	N-methyltransferase activity
GO:0008213	P	protein alkylation
GO:0008214	P	protein dealkylation
GO:0008276	F	protein methyltransferase activity
GO:0008757	F	S-adenosylmethionine-dependent methyltransferase activity
GO:0009889	P	regulation of biosynthetic process
GO:0009891	P	positive regulation of biosynthetic process
GO:0009893	P	positive regulation of metabolic process
GO:0009987	P	cellular process
GO:0010452	P	histone H3-K36 methylation
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010557	P	positive regulation of macromolecule biosynthetic process
GO:0010604	P	positive regulation of macromolecule metabolic process
GO:0010628	P	positive regulation of gene expression
GO:0016043	P	cellular component organization
GO:0045935	P	positive regulation of nucleobase-containing compound metabolic process
GO:0016278	F	lysine N-methyltransferase activity
GO:0016279	F	protein-lysine N-methyltransferase activity
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0016569	P	covalent chromatin modification
GO:0016571	P	histone methylation
GO:0016577	P	histone demethylation
GO:0016705	F	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016706	F	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0016740	F	transferase activity
GO:0016741	F	transferase activity, transferring one-carbon groups
GO:0018022	P	peptidyl-lysine methylation
GO:0018024	F	histone-lysine N-methyltransferase activity
GO:0018193	P	peptidyl-amino acid modification
GO:0018205	P	peptidyl-lysine modification
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0019538	P	protein metabolic process
GO:0022402	P	cell cycle process
GO:0031323	P	regulation of cellular metabolic process
GO:0031325	P	positive regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031328	P	positive regulation of cellular biosynthetic process
GO:0031974	C	membrane-enclosed lumen
GO:0031981	C	nuclear lumen
GO:0032259	P	methylation
GO:0032451	F	demethylase activity
GO:0032452	F	histone demethylase activity
GO:0044770	P	cell cycle phase transition
GO:0034968	P	histone lysine methylation
GO:0036211	P	protein modification process
GO:0042054	F	histone methyltransferase activity
GO:0042752	P	regulation of circadian rhythm
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043233	C	organelle lumen
GO:0043412	P	macromolecule modification
GO:0043414	P	macromolecule methylation
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044422	C	organelle part
GO:0044424	C	intracellular part
GO:0044428	C	nuclear part
GO:0044444	C	cytoplasmic part
GO:0044446	C	intracellular organelle part
GO:0044464	C	cell part
GO:0044839	P	cell cycle G2/M phase transition
GO:0046975	F	histone methyltransferase activity (H3-K36 specific)
GO:0048511	P	rhythmic process
GO:0048518	P	positive regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051173	P	positive regulation of nitrogen compound metabolic process
GO:0051213	F	dioxygenase activity
GO:0051252	P	regulation of RNA metabolic process
GO:0051254	P	positive regulation of RNA metabolic process
GO:0051864	F	histone demethylase activity (H3-K36 specific)
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0070013	C	intracellular organelle lumen
GO:0070076	P	histone lysine demethylation
GO:0070544	P	histone H3-K36 demethylation
GO:0070988	P	demethylation
GO:0071704	P	organic substance metabolic process
GO:0071840	P	cellular component organization or biogenesis
GO:0080090	P	regulation of primary metabolic process
GO:1901564	P	organonitrogen compound metabolic process
GO:1902680	P	positive regulation of RNA biosynthetic process
GO:1903047	P	mitotic cell cycle process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1903508	P	positive regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140096
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K10277	KDM8, JMJD5; lysine-specific demethylase 8	EC:1.14.11.27	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network