Detail information of g149569


Location
GeneChrStartEndStrand
g149569Scaffold_44177:HRSCAF_427263257321280481+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020258777.15.3e-83upstream activation factor subunit spp27-like
SwissprotQ05024.17.8e-15Protein TRI1
trEMBLA0A835QCK43.9e-80Upstream activation factor subunit spp27-like

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT1G49520.143.972e-70 263SWIB complex BAF60b domain-containing protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag149569.t1
Allium fistulosumAfisC1G02333; AfisC4G04614
Allium sativumAsa7G01821.1; Asa7G01833.1
Arabidopsis thalianaAT1G49520.1; AT3G19080.1
Oryza sativaLOC_Os03g55570.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF08766.8DEK_CDomain439663.01.7e-17
PF02201.15SWIBDomain160232106.44.7e-31
PF02201.15SWIBDomain28135491.61.8e-26

Gene Ontology
AccessionOntologyName
GO:0000120CRNA polymerase I transcription factor complex
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000500CRNA polymerase I upstream activating factor complex
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005667Ctranscription factor complex
GO:0005730Cnucleolus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006355Pregulation of transcription, DNA-templated
GO:0006356Pregulation of transcription from RNA polymerase I promoter
GO:0008150Pbiological_process
GO:0009889Pregulation of biosynthetic process
GO:0009891Ppositive regulation of biosynthetic process
GO:0009893Ppositive regulation of metabolic process
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010557Ppositive regulation of macromolecule biosynthetic process
GO:0010604Ppositive regulation of macromolecule metabolic process
GO:0010628Ppositive regulation of gene expression
GO:0045935Ppositive regulation of nucleobase-containing compound metabolic process
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0031323Pregulation of cellular metabolic process
GO:0031325Ppositive regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031328Ppositive regulation of cellular biosynthetic process
GO:0031974Cmembrane-enclosed lumen
GO:0031981Cnuclear lumen
GO:0032991Cmacromolecular complex
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043228Cnon-membrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043232Cintracellular non-membrane-bounded organelle
GO:0043233Corganelle lumen
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044428Cnuclear part
GO:0044446Cintracellular organelle part
GO:0044452Cnucleolar part
GO:0044464Ccell part
GO:0044798Cnuclear transcription factor complex
GO:0045943Ppositive regulation of transcription from RNA polymerase I promoter
GO:0048518Ppositive regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051173Ppositive regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051254Ppositive regulation of RNA metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0070013Cintracellular organelle lumen
GO:0080090Pregulation of primary metabolic process
GO:1902680Ppositive regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903508Ppositive regulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K15223UAF30, SPP27; upstream activation factor subunit UAF30EC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.