Gene information

Detail information of g15027

Location

Gene	Chr	Start	End	Strand
g15027	Scaffold_44262:HRSCAF_427348	293752	311507	-

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_004305679.1	2.2e-38	PREDICTED: nuclear transcription factor Y subunit B-3-like
Swissprot	O23310.1	1.5e-39	Transcriptional activator HAP3C
trEMBL	B9SYE3	2.1e-38	Ccaat-binding transcription factor subunit A, putative

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G14540.1	91.86	2e-44	174	NF-YB3	nuclear factor Y, subunit B3

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g15027	AT4G14540.1	86	7	0	1	86	35	120	91.86	2e-44	174
g15027	AT5G47640.1	89	16	0	1	89	41	129	82.02	1e-41	165
g15027	AT2G37060.3	115	39	1	1	114	44	158	65.22	8e-40	159

Ortholog group

Species	Genes
Allium cepa	g15027.t1; g210431.t1; g279559.t1; g279560.t1; g325255.t1; g325257.t1; g333453.t1; g334246.t1; g490269.t1; g77027.t1
Allium fistulosum	AfisC2G01378; AfisC7G00269; AfisC8G00803
Allium sativum	Asa0G04322.1; Asa1G04541.1; Asa3G04699.1
Arabidopsis thaliana	AT2G37060.1; AT2G37060.2; AT2G37060.3; AT2G38880.1; AT2G38880.2; AT2G38880.3; AT2G38880.4; AT2G38880.5; AT2G38880.6; AT2G38880.7; AT2G38880.8; AT3G53340.1; AT4G14540.1; AT5G47640.1
Oryza sativa	LOC_Os01g61810.1; LOC_Os01g61810.2; LOC_Os03g29970.1; LOC_Os05g38820.4; LOC_Os05g49780.1; LOC_Os07g41580.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00808.20	CBFD_NFYB_HMF	Domain	1	55	74.8	4.4e-21

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08065	NFYB, HAP3; nuclear transcription Y subunit beta	EC:-	Antigen processing and presentation	ko04612

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network