result

Gene information

Detail information of g153350

Location

Gene	Chr	Start	End	Strand
g153350	CHR7	20431655	20434797	+

Sequences

CDS

Protein

Gene

>g153350.t1
ATGAAGGAAAAAAAGAGGTTTGCTAGTGTTATTTCCTAATTGGCAATCCTATTAGAACACCAATTGCTGTCTTTGTAGTGGGTACCCATGCATTATTTTCTCCACAATCAAATAATGAAGAAAATAATAAAAATCAAAAATCAAAAAAGGTGGTAAACAAGCATCCACGTTATACAATCATTCATCATATGATCTCTTCCTCAAACTTCATTGGTTCAATTACCCACAACCAAAATACGAACAGAAGCCACACCACACAATAATCTAACACTATGTATATAGTTCATTTCACTACTCCAACAATATTATTACAACATCCATTCAAATAAAATTGGAGGAAGTTCCGTCTCCTCCACAAACCCTAAATCCAAGTATCCAACTCATGTCATCCTCCAAATTATTTTGCAACTACTGCCACTCTTCCAACTACAACCTCAATGGCTACTCTTGCCCACATCACAACACTATAGCCGACCTCAACGCTCCTTTAGATTTTCTCGATTCTTCCAATCCCAATACTATATACACCACTACTGCTACAGCCACATCCACTAATAATAATAGTCACGATACTAGCGCTCAAGGGTTGCAGGAGTTCCAATTTTTGGGAAACAATGAAGTCGAAGCTCTGGCGTGGTTGTTCAACGACAACCCGCCTAAAGAGGATGCGCGAGCGGAAGAGAGGGCCTGCGGCCCTAAACGGCATGACCGACACGTGGTCGGGCCGATGGGTTTTAGCGATTATCTCGAGATGGATGGATTTCGAAATTCGTGCAATAATATGGGCGGCAGGTTGACGTTTGATGTTTGCGTGAGCGGTACGAGCTCGGCCGATTCGATGATTAGACACTCGCCTCCTGCGCCTATGGAGATTCCTACAACCGTCGTTGGTAACATTGTGAGTTTTGTTTGTTGATTTATCGATTTAATTAGTAGGGCATCGAATATCATGAATTTTTAAATTTTGATCCTCAATTGCTCGATTGTTTTCTCATAGCCGATGATTTTAATGATGGAACGGGTTTACGTAACGAAAGGAAATCAATGAGCGTGAGATTTATAGTTGTCAAATTTCTCAGTAGATAAAAGATTCTTTTTATGGCAGATATAGTGTGCCGGAATAAAGTGCAAGATAATAGTACCAACGTTTTTAATCATTTCGCTCTTTTGCTATCTAACATGTTGCATTACGCTTTTGGCATAAAGGTTTAGTATATTCTGTTCAATGTTCATTCTTTGTATTTTTAGAAGATGATCTTTTTGCAATATCTCATTGGTTGATTATGATAATATATGTTGAAGCACGAATAGTGATATTGAATGCCTATTGTTTATTTTTATATCTCCTAAACAATTTCGAAAATGGATTTAGAGTATGATTTTTTTTTTTTTTAAAATTATATATCCCAATTTCAATTAGTGTTGCCAAAAGCATCCAACAAGTATTTTTTATTTATTACGAAAAAATGATGCTTAATTTTAAGCAAAATATTCATATTAATGTCTGGTGGAGTCAAACTTAAGACCTCAAAAACAAAATCTGACCAACATATTATTCTTCTTTGTATCAATATACAAATAATACCCAACAGAGGTATGACCAGAATGATATTTACCGGTATTTTGCTACTAGGTGTCCTCACTTAGTCATTAAATATCAACAACTTGTCCAATTTTCAAAAATTCCAGCAAGTTACGTACCAATAACAATGTTTCACGTGTACCCTTTTTTTTTTCTCAAAAGAAGACATATCATACTTACCAAAATTATGAAATTCAGGTAATTAAAAATATGCTACCCCTTACTCGGGTAGCAACCGTAGCATAGAGTAAAAAACAATGTTGTTGGGCACGCTAGACATAAAATATTGGCAAACTATGATACAAGTAAGATTTTCAATATTTTAATTTTACTGTTATCATGGAGGATGTCACTTCAGACAGTTTCAATTTTCATATCCTACTTTCATTCCATCTTTCATCCTAACTTTATCTCAACCATTCACTTTTGTATCAATTCGTTATTTAAAGGTACGATGTAATTCAATCAATAATTAAATCGTGTGATGTAGGGCTTAGATTGAACTAGACCAAACATTGAATAATTGAACATGGGAAAAGAGAAATTGAGCTGATCCAAGTTGATGATGAAAGAAGAAAAATTGCATACTTAACCAATTCTTGTATTCAATTTTCACAACTGATATGTGAACTTTTGGATTTTTTAAATGTGATCACGGAAACAGTGATTGTCCCTTCGCATAAAAGAATTTTTTTAAACTTTGCTCTGTTCAACCTGACGTTTCCACGAACAACCCTTTTTTATAAGTATGCGTACTAGGTAGTTTTATGGTATTAAATTGCTACAAAGATGCTAAATTACAAAAATAATGCGAGTACTTACAAAAGTGTGTATATTATGTTTATGATCATCCAAATAGAATACTGTGGACAATAGAATGAACCTAAAAACCCCATGAGTACAGTACATTTTATTAACTTACTGTACCGTTTTGTTACAGGACAAGACACCAACAAACGATAAATGAAGCTTACATCATCTAATATGCAATTAGTAACCCAATTTCACTATGTTTACGCATCTGCATGCAAACTTCAAAACCAATGATTTAAAACCATATTTATAGCTGATTAAAAATTCAATAAAAAGATATTTCATTTTACAATTGAATACATATTTGGTTTGTGATACCATGTCCTATCTCCTCTTTTAAACATTTGCAGGCAAAATAAACACACAAGTATAGACTTGAAACTCCCCTGAAAACTTTATTTACATGTAGATGAGGACTCGTTTGTACAACGACGCATCGAGCTGCAGTTATACTAAAGAGCAAACGGGCGAAGGCACCAACTCAAACCAACCCGACCCGAACCCAGATCGAGAAGCTAAAGTACTGCGCTACAAAGAAAAGAGAAAGAAAAGAAGGTACGAAAAGCAAATTCGATACGCTTCTAGAAAAGCTTATGCTGAAATGAGGCCGAGGATTAAAGGTAGGTTTGCAAAGACGCCGGAAGTCAGTAATGCTCCGGTTAATGAAGATAATAATGACAATGATAATATTATTTCTAATTATGATCAGGAGAGGTTTGATTTTGGATGGTACCATCAGCAATCTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	ONK73575.1	1.2e-27	uncharacterized protein A4U43_C04F33070
Swissprot	E5RQA1.1	6.9e-07	Protein GRAIN NUMBER PLANT HEIGHT AND HEADING DATE 7
trEMBL	A0A5P1F5C7	9.0e-28	CCT domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G15840.1	51.14	7e-17	84.7	BBX1;CO;FG	B-box type zinc finger protein with CCT domain

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g153350	AT5G15840.1	88	30	2	212	286	260	347	51.14	7e-17	84.7
g153350	AT5G57660.1	63	23	0	230	292	270	332	63.49	1e-16	84.0
g153350	AT2G24790.1	60	16	1	230	286	211	270	68.33	2e-16	83.6

Ortholog group

Species	Genes
Allium cepa	g153350.t1; g417902.t1
Allium fistulosum	AfisC5G00860; AfisC7G05578
Allium sativum	Asa3G00698.1; Asa6G06370.1
Arabidopsis thaliana
Oryza sativa	LOC_Os10g41100.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF06203.11	CCT	Motif	245	287	61.6	5e-17

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0008150	P	biological_process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048519	P	negative regulation of biological process
GO:0048579	P	negative regulation of long-day photoperiodism, flowering
GO:0048580	P	regulation of post-embryonic development
GO:0048581	P	negative regulation of post-embryonic development
GO:0048583	P	regulation of response to stimulus
GO:0048585	P	negative regulation of response to stimulus
GO:0048586	P	regulation of long-day photoperiodism, flowering
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0051093	P	negative regulation of developmental process
GO:0051239	P	regulation of multicellular organismal process
GO:0051241	P	negative regulation of multicellular organismal process
GO:0065007	P	biological regulation
GO:2000026	P	regulation of multicellular organismal development
GO:2000028	P	regulation of photoperiodism, flowering
GO:2000241	P	regulation of reproductive process
GO:2000242	P	negative regulation of reproductive process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network