result

Gene information

Detail information of g155182

Location

Gene	Chr	Start	End	Strand
g155182	Scaffold_44954:HRSCAF_428040	45603	51280	-

Sequences

CDS

Protein

Gene

>g155182.t1
ATGGATCAAAACTCGGATAAAGATGCTAGTGATACTGCCAAATTTTCAATAATTCAAGGTAAAATTTGTATAGTTGTCATTTTCTCATGGTTTTTTAACTAGGTAAGTTCCCCAGTTTCCCTACATGATTTTGATTATTTAGCACTCAGTATCAAACAAGATGTGCATATTCCTTGTCAAGTGTACATGAACTTGTTTTAAAATTTCTCTGAGTTCCTATCAATGTAGTTTTTAGTAAGTTGTTTGTAGGATATTCTAAAACCGTTTTATTGTCATATAACATAGCTTACTACGTTTAGTTGGTTGGACAGAGTCATATTAGTTAGTATATTGGTATAGAATAATGCCATTAGATCATTGGTTTTCTCACTTTGTTTTCATGTACTTAAATCAACTAAAATAAAATAAAAGGACAAGTAGAGAAAACAAGAAAATAATCCTTGATCTTAGGAGAAGGTTTGTTTGGATTGATAGGTTAATGGAGTAACTGACATTATCTTAAAAATCCAAGAGTAAATAAGCTAGGGATAGGAATAAGTAAGAACACGTTAGCGTTTGTTTTCTTAAAACACCCTTGGAGATGTCTTGATAGTTATTATGAAATGATAAAATTTACAAACTGAAGAAAATCAGTCAATGATCTATTGATGGAAATGGATCCCTAATCAGTAATATTTTGCAATGCTTGTAGCTATATACCAAAAATAAATGTAGCATGTCCGGCCCGATGTTTGATAACAAACAAAAATGCTACTTTATACCTAATTTGTGTTTTGTCAAATTCTACACTAGGAACAAAAAATACAAAATGGATCACAAATCAAATTAACAAAAGTGGAAAGTAGGATCCGCCATTTATTTCCAAACTTAATACCTGAAAACCTTTCTTAAAAGTAAGTTTTACTAAACACTCCTTCAAAATTTTCTGTAAAATATGCGTTTTGAACTGCATATATTTACAGCTAAAACGGTAAATATTTCCAGTTTAAAATGTAAATATTTATAGTTTAAAATACAAATATTGGTAGTTCTAGCTGCATCTTTTTGTAAAATGAAAATTTACAGTGCGGACTGTAAATATTTGAAGTGTAGAATGCACATTCTTGCAATGTGGACTGCAAAATTATCATCTTGCGATAATATGCCGTTAACTGCGTATTTTCATAAGAAAATTTGACTAGGGTGTTTCGTTAAATTTCCTTGAGGGAGGGTGGAAATGAATTTTGAAAATTTTGAAGGGTGTTTGAAAAAATGCCCCTTACCAAAATATCCCTTAAATACCTCAGTTTTGCATATTCTTACATTTTGTCAAAATTGAATTTATGTCATAATAGCAAATTCCGATAATAAATAGGAGTTCATCTCATAAGAAAGGCAATGCATGGTAAAACACAGTTCTGGTAAACCAGTGAAAAGAAAAGCTAGTGCTCATATATGCTCAAGATAAATCAAATTATTTACTTGTGGATTATGTACTTTGAAATAAAGCTGACAGCAGATAATTAACAGTACATAGGTGGATAAGAACATAGAATTATTGTGCATGTGACACCAATACCGTTGCCTTTTGAGTCTTATCTCATAATCATTTTCGAAATAAAGTAATCGACCATTAGTTTATGTAAAAGGCACCGTCTTTGTTTGTTTATGGTAATTTTGGTGAAACATTCCAGTTTGAAACTCCTTAATTCTGCTATAATGAATATTTCCATGCAATACGATTTAACTGGCTTATGTGTTAGTAGCCAAGTGACACTGATCAAATTTCATTTGAAGACCGACTAGAGATTGCAATTACTATAGTTTTTTTTCATGGGTAGCCAAATTTAATATATTTTGCTAATTCATCAAGTTCCCCGCTTTTTTTCTTGATTGTTTATAAAAGAGGATGGACATTGTGAATACAGACTACCTTGATATACATATACATGAATATGATGTAGATGAAGAATTAAGGGTAATGAGATAACATAATCTTGAGATTTATGTGCATATCTGTACCAATGAAATTTATGCAGATGAGTTTACACAAATATAGAGTTCTCATCTCTGTATTGTTTCATTCCCGCCAAAGTAAACCCATGATCAATACAACACAAACAAATTAAATAGTCCACAATGTTTTACTCTGCAACTTGGTGAACCTGTAGACTAAAAACTTAAAAGGTACAACTGAACGATTCCTCTTTATTCACTTGCTAGATCTTCTATCAAACCGATAAAGATCTCGCTCTAAATTTCTCTTGAATTTCTATGGCTCTTTGTTATAGCAAGTATGCTCAAGTTGCATGCTTAACTCTGACCGTTGAACCCTTAACCCTTTATGACTTTTATAGTTCTCTCATACAATGAGATTGATTTCCTGTAGACGTATAATTGGACCATTTAAAGAGCGCTTGTTATGTTTAGAAACATGGTTGAATCACTAAACCTGACCCTATTTAAGATTGGCTTGAACCGGTCTCACAAGAAATAATGTGCGTAGAGATTTCAGTTTTTAGTTATGAACTTGACTATGTTATAGGACTAGTGGAGTTGAATGGTTTTAACTACTATTATCAGTTTTAATTGGAATGTGCCCATATTGTGGTGACAATATGCACAAATATTTAAGAAAGAAAGAGCGCCTCTGACACCGTTATCAAAACTGATCTCATTTCCAAAGAATGTGTACATTTTATTGCTGCATTGCAATGCAGTTTGGTCTGTTACCAACTTCACTACAATGCAGTACATTCAAGAGTCTCGAACAACCCACTCCAACTTCTCCTTAGTCGTTTCTTGGCACTTTTTTCATGTGTGTAACGTTTGGCTTTTTTTTTTTTCTTTAATTTTTTTTAATCCAACATGATTTTATTTTATTTTGTATAGACAACAAGGATTCAGGAAACAATCAGAAAACTCAGCAACATTCCGCAACAATTGCTTTGAGTTCTCCTTTTGAGTATCAAGGACGTTTTGAACTTGGGCTAGGTCGATCTATGGTAAATGTTTGTAATCATTTTTTTTTTTTTTTTTTTTTTTGTGAGCTGATAAGATATAAAATTTAACGACTTCTATTTTATTTTGTTCTGCAGAATTGTTCAAATATTGCTTATGCTGATCCATGCTATGGCATGTACGCAACCTATGGAGCTCAATCAATGGTTAGGTTCTACATAGTATCTCGTTGTTTCTTCAATTATTTGTACCATCTCCAACTATGTGAAAATGAGAATAAGACAACAATGTTGACAAAGACAAATTTGTTGTGCATCTAACTCAACAGTATTTGGATAATAAGATCTAAAGTAACAAGAACAAAGGAAGAATAGAACACTGTCAACCATTTTACACCCTAGTGCATTATTCAACCTTTTAACCATTTTGCGTTCTTTTGAAACTTACAACCCATCATTCATACAGTATTTCAAAACATATGAAGACTGCAGACTGTCACAATCACTCTCCTAATCAACTGTTAAAAGTTAGATGGCAATAATTAGAATTTAAACCTCATAGTCTCATGTCAGTGTTTAGTTATGAACTAGGTCTTCGAAATATGAGACTCAAATTGTCACATAAAAACTCATTTTTGATTGAATATGGATTTAAATACCTGGTTGTGTTGCTTGAACAAAGCACCATTTTGATCTAAAATAAAATATAAAAAATATAGTTGTGGATTCAAATGGGCGATAACATAAGACATAAAGGTAATGTTTGGTTTGAAAAAAAGTTTTGTATTTTGCGTTGTAAGTAATGTACTTTAAAATGCATGGGAGTGAGCAGAGAGTGAAAAGCAATCGATTTGGAAAATGATTTTAACATTAAAAATCAAAAATGACTTTTCTTTGTTTTCCGCCTTTTGGAAAATATCAAACACCATGTTTTCACTTCCTCCTCCTAGTGAGAATGCATAGGATTTTCGAATCTCTCATGCCGTTTAACATACATATTTACAACGTATAATACAAACTCATTTTCAAACCATACACTACCTAAGATTTTCGTTGTCGTCGGTTATGAAGTCATATCATTTGGACTTTATTGCTAGTTTAGCACGTAGTGCATCCTCATACTGAGCCAATGTCTTCTAACAAAATTCTCTATTCTATGAACAAAAGCGCCTTATTTTTGGAATATGTAGACATGCTTAGAAGATGGATACTGATTTTTACCTCCAAGTTATCTAATGACTTTGTTGTGTTGCCATTTAAAATATAGTACATACAGCAGACTTGAACGAACCAATAAAATTGACCCTAATAATAAAAAGTTTTGTAAATCCTAATGCACTGGTCACCTCAAGAATTCTTTTACCTTAAAGTGTTCGTTTTTTTACATTATGTTTTTATCAAATTTCATTGCAAATACTTATTTCCATCATAAATATTGTTAATGACTTCTCGTCGGTTATTTCCAATGAAGCATGGGCGGAAGCTTCTACCACCAAACATGACAGCTGATATGCCTATATATGTGAATGCAAAGCAATATCATGGAATTGTTCGCCGTAGACAGGCTCGTGCTAAAGCAGAGATGGAAAATAAACTCATCAGAGTTAGGAAGGTGAGTGCAAGCTCTAACCATAGTAACAAAAATTAAAACAGCGTGGCATCAATCTCTCCTTTCTAATGCCATGAAGTTTCATTCTTTGTAATCTCAGTTTAGTAGCCTCAGTAATTTGAGATGCCAGGTAGCCTTGGTAATAGGAAAGAAATACGAGAGAATTTTTAGCTGTATTTTCAAGACATTATGTACACACACAATCTTCAAATATTATGATTTGAATTCCATTTCAGATCTTCCTTTAAGATTCGATTTATGTTCCAATTCAAATCCAGTTAAAATTGCAAGTGAGAAAAATTATTCAATCCATAAAAATATATCACTATTCTAGTTTAATGTTTTCTAAACAAAATGAAAACGGAACAAGGTAAATTGATTTGTAGGTTTAGATGTGGAAGTTTAAATATCAAAGTTAATTTCAAAAGATGTACGTGCGTTAAAATTTGAAATTTTGAATCTATGATTTAAATCCTGTATCGATTTAAAATTTGAACTTTGCAATATACGATTTGAATCCTATTTCAAAAATCCTGCATATAAAGCATGTGCTTGACAAACACATACTCCAAGTGATTGTTACAAGATTGTCGGTTTCATGGTTCAAACACGTAACGTCCTCAAAATTTCGTAGCATTTGAAATCGTCTAACTCAAACTGTAATAAATGTGGTAAAACGATGCAAGGGGTGCCATTGAACATTTCTCAGATACATATATACATATATAGGTGTATGTGTGTTACATACGTACATATACATATACACTTGTATTTATCCATGGCAACACTAACTAATTTTGTGTAATATTATCCAGCCATACCTCCACGAGTCTCGACATCGCCACGCCATGCGCCGAGAAAGAGGAAGTGGAGGCCGGTTCCTAAACACCAAAAAGGAAAGCATGAAGCAAAACTCATCAAAAGACGAAAACACCCGCAACGCACAGTTCACCAAATCGCCAAACTCTGTTCTCCATCACACTAATAGTGGAAACCTCTACTCCGGTAGCACCGCAGGATCCGCAATCTCCACCATCTATTCTCGAGATGACTCCGAACATTTCAACTTCATCGACCACATCCATCCGTCCATCTACATGATGGGCGGAGGAGAACTTCTCAAAGTTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020270236.1	2.8e-66	nuclear transcription factor Y subunit A-10-like
Swissprot	Q8LFU0.2	7.6e-24	Nuclear transcription factor Y subunit A-10
trEMBL	A0A5P1EQ82	2.0e-66	Nuclear transcription factor Y subunit

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G20910.1	42.78	1e-28	123	NF-YA9	nuclear factor Y, subunit A9

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g155182	AT3G20910.1	180	79	8	59	219	122	296	42.78	1e-28	123
g155182	AT1G72830.1	103	29	2	64	154	137	239	60.19	2e-28	122
g155182	AT5G06510.2	142	67	4	49	187	87	223	47.18	3e-28	121

Ortholog group

Species	Genes
Allium cepa	g155182.t1
Allium fistulosum	AfisC8G04293
Allium sativum	Asa1G01359.1
Arabidopsis thaliana	AT3G05690.1; AT5G06510.1; AT5G06510.2; AT5G06510.3
Oryza sativa	LOC_Os03g44540.1; LOC_Os03g48970.1; LOC_Os03g48970.2; LOC_Os03g48970.3; LOC_Os03g48970.4; LOC_Os07g06470.1; LOC_Os07g06470.2; LOC_Os12g42400.1; LOC_Os12g42400.2; LOC_Os12g42400.3; LOC_Os12g42400.4

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02045.12	CBFB_NFYA	Family	95	149	98.4	2.6e-28

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005667	C	transcription factor complex
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009566	P	fertilization
GO:0009567	P	double fertilization forming a zygote and endosperm
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0016602	C	CCAAT-binding factor complex
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0019953	P	sexual reproduction
GO:0022414	P	reproductive process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032991	C	macromolecular complex
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044422	C	organelle part
GO:0044424	C	intracellular part
GO:0044428	C	nuclear part
GO:0044446	C	intracellular organelle part
GO:0044464	C	cell part
GO:0044703	P	multi-organism reproductive process
GO:0044798	C	nuclear transcription factor complex
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051704	P	multi-organism process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0090575	C	RNA polymerase II transcription factor complex
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08064	NFYA, HAP2; nuclear transcription factor Y, alpha	EC:-	Antigen processing and presentation	ko04612

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network