result

Gene information

Detail information of g156844

Location

Gene	Chr	Start	End	Strand
g156844	Scaffold_45202:HRSCAF_428288	21456	25069	+

Sequences

CDS

Protein

Gene

>g156844.t1
ATGGATGTAGTCACTCCTCAAGAACACCTGTGTTATGTTCGTTGCGCTTACTGTAACACCGTGCTTGCGGTATTTATTACTTTGTCAGATCCATGAAGAAGAAAAGAAAACTCTATGTTCTTTATTTAGGACCGGATATAATATATGTAGTATTTATTTGATTAATTTGAGAATAACAAATATGTAGGTAGGAGTACCGTGTAGGAGAATGATGGATACAGTAACGGTGAAATGTGGACACTGCAATTCTCTTTCTTACTTAAATCCAAGGCCACTTCTTCAATCACTTAGTTGTTCTGACCATCACATCAATTTTCAGGTTATTTCTTCTTGTTTTTTATTATTTTAATTTGCTGACTTTCTTTGATATTTATTTGTGCAATTTAATTGAGCTGTATAAATTTTAGGGTTTGAATCATTTGTTCTGGTTAAAGCTGTTTTTATTCCGGGAATGATGGGTCAAACGTTTACAAGATATAATAATGTTTTTTATTCTTTAGTGTTGTTGAAATTTTTACTAAATGTACAAAAAAATGCCATAGCCTAAAAATAAAATGTGGTAACTTAGCTATTCAAACTTGGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCTTCTTTTTTTTAGTGACTACGATTTGCTTGTAAAATACCAGAATCAAAACCTATTTTCACATTTAACTAGCTTTCAGATCTAAAATTTGTATTGTACTTTTTAAAATATATATCAGGAAAGTAGTAGAGTTCATATGCTTTTTATTTATTTTTTTTATTTTTATTTTTTGTTCTTGTGTGTATGAATAGTACTATATGGTGACTTTTATGTACTAAATCTGCACTTTTATTGTTTTCATGGAATATATAATTAGACACTAAAGAGGACACTGAATGTATTTATCTTCATGTATGTTTTGAAGAAATTTGATTAACCGAGCTACAGCTAGCCCCATTTTAGTTGGTGTATAAACTATATTTTGTTTATGATTTCTCGTAAGGTTAGTTGGGCCGATCTTACTGTATTTTAGAACTTTATTCAGATGCAGTTTAGTTGAATACAAAAATATAATATAAAAACACATTGTATTATTATGATAAATTGCACACATTTTGAATTCATATATAATCTAAGGATACCTTTCTGTTTTCAATTTGATTGTAAAATCATTGTGCTAATCCACATAAGACATCTTGGATTACTGAGCTTTGTTAAGTAAATCAACTGATATTTCTTTTTAATTTGTTGGTCTGTTAATTCCTTAAACTCTTTCTAATCGTGTATATATATTTGTCTAGCACTTAAATCGTCTATCTGGTTATCAAGATAATTTTTCATTTTATATTAAAATATAAATAAATAATTAAAATCAATTCCATATTCTTCTGTATTTAACAAGAATTTAGTTTGTATGCTATATAGGGTCAGTGCAATGAGTTTAGGAAGGGGCAGCAGTTCTTACCATCTTCATCAACATCATCTGAAGACATTACCAGCCCTAAACTGCCTTTTGTCGTTAAGCGTAATTATTTATTTCCTAATCAGAATTAATATGTTGACTTGTTATTAGTTTTTCATATTATTATATATGTTTATCTTGTACAGCCCCGGAGAAGAAGCATCGACTTCCTTCAGCATATAACCGATTTATGAGGTAAATAGGATGTGTGTGTGTATGTATATGTATATATGTATATGTGTGTGTAACACATAGAGTGTGTGTGTGAACATTTAATTAAAACAAGAAGTAAAATTGACCTTAATTTGATAATGTATGCACACACTGTTAAAATATACATATCAATGAATTATATGAAACTAATTACTCTTAAATGTGAGTGACTGCGCGGTTAAAGTATTTGGTTGTATAGACCATAGTTTCACGAATGAACCTCGAGTTGAACCGTGTTGATGCAAAGTCAACGGTTCTAATGGTTCAACCGGTCAGAGCATGAGAATCGCGTTGATCATCGTTATTTTCTATTTTTCAAATTCAAATGTAAAATTGTTTCAATTAATATTAAAATTTAACGAATTACAATTAATATATTGAACTTTAAAACAATTTTCTTGAACATTTCATAATAAATATTAATTGAAATAATTCTATAACAATGTTTTTAGCACAAAATTGTGAATTTTCTTTTTTTTTTAAATGAAAGAGTTTCAGTTCAACAATGATTCGTAAAAAGTATGCTAATAATGTATGATGTCGTTCAAAATTGATAAGATAATCTAATAATTTTGTGGCTAACGTTATGAAATTATAAGTTAATTTGATTGTATGAAAAAACGAGGAGTGAAGCTATACTTTTTCCTCAAATTTGAAGAGTCATGTGGTTCAAAGAGGTCGGTCCAGAGGTTTTTTTCAAGGTTTTTAGGTTAGACCGTGGGTTCATGCACGTGCAAGATTATTTTATTTTCAGAATCATAGTGGTTCAAGATTGAAGGTTAACCGTGGTCGAACCGAGATTGGGTTGGGTCTTTAAAATACTGGTATAGATAGGGATCTTGGATTTTACGTTCCAATGCATCTTCTATAGTCAAGTTCAGGAGAGAAAAAATCACCACAAATGTATGGTGATTTATTCTGAAATTTAGTCCAAAAATGAGTTGCATAATAGAAACAATGTATTAGTGGTCAAATTATCTGTTAATAATTGGTAGATTGTAAGTAGACATACTCAAAACATAGAACACATTGACAGTCTTGTATTAATGCAAATTAATTAATAATGAAATTTTTGCCTACTAACATAACGGTGAACAACAAAATTGGCTTGTTTGACTGGATTCAAGAATACTGATTTCTATATTATTTGGCCTTTGTAAAAATATAACTCATACCACTTAAATATAAATTAGATATATACGGCCAAGTTGTAAAACACTAACTAGGTAGGACATGTATGCTTTTAATTCTAATATTAGATATATACAATGTTGCATACATTTTTTCACAGGAATCTACAACTACATATATTTGCAAGATCACCTAGGAAATGAAAAGAATTATTTACTTCATATTGTGCCTTTATTAATTTGAATGTGGCATCATGAAAGTAGCTGGTGAATTATGTAATCTGCACAGTATTCTATTTCATATATGTAGCAATTGTTTTTGTGTACTGATAATTTCAAATGGCTTTATACAGGGAGGAGATCCAACGAATAAAAACCGCGAATCCTGAAATGCCTCACCGTGAAGCCTTTAGCACTGCAGCCAAAAATGTAACCTTTGTGTTATGATATTATCATATATTTCATCTTAGCTTTATATGATTAAATGATTAAATTTCGTAGAAATAAGAATCAAGTTATTAATGTACGGAAATAAATTGTGATCAAAATCAGTGGGCGAAATGCGAACCACGAGGTGTGCTAGCAGCTTCTGCAAGCTCAAATATTACACATATTGATAAAGATCTTGGAACATCTAAATCTATTGCTAATACCCTTGATCAAGTAATTTCTAAAACTAGTTATTTTTTAAATCATATGCGTTGAATTTTGTTTTAATAAAATATACTTTTTATTATTGTTAATTTTCAGGAAAAGACTAGCAATGGATTTTTGATGAGTAGCATATTCAAGCAAATGGATCATAGAATGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020276732.1	7.1e-74	protein DROOPING LEAF-like
Swissprot	Q76EJ0.1	5.3e-58	Protein CRABS CLAW homolog
trEMBL	D2Z0F1	6.5e-69	Uncharacterized protein AaDL

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G69180.1	59.88	6e-43	170	CRC	Plant-specific transcription factor YABBY family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g156844	AT1G69180.1	162	60	4	4	162	14	173	59.88	6e-43	170
g156844	AT2G26580.2	147	63	4	4	144	5	144	48.30	1e-31	132
g156844	AT2G26580.1	147	63	4	4	144	5	144	48.30	1e-31	132

Ortholog group

Species	Genes
Allium cepa	g156844.t1; g301000.t1
Allium fistulosum	AfisC5G00495; AfisC7G05178
Allium sativum	Asa3G00953.1
Arabidopsis thaliana	AT1G69180.1
Oryza sativa	LOC_Os03g11600.1; LOC_Os03g11600.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04690.10	YABBY	Family	6	146	175.6	1e-51

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0003002	P	regionalization
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0009653	P	anatomical structure morphogenesis
GO:0007389	P	pattern specification process
GO:0009888	P	tissue development
GO:0008150	P	biological_process
GO:0009791	P	post-embryonic development
GO:0009798	P	axis specification
GO:0009889	P	regulation of biosynthetic process
GO:0009908	P	flower development
GO:0009943	P	adaxial/abaxial axis specification
GO:0009944	P	polarity specification of adaxial/abaxial axis
GO:0009955	P	adaxial/abaxial pattern specification
GO:0010022	P	meristem determinacy
GO:0010073	P	meristem maintenance
GO:0010093	P	specification of floral organ identity
GO:0010094	P	specification of carpel identity
GO:0010254	P	nectary development
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010582	P	floral meristem determinacy
GO:0048646	P	anatomical structure formation involved in morphogenesis
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022414	P	reproductive process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0048366	P	leaf development
GO:0048367	P	shoot system development
GO:0048437	P	floral organ development
GO:0048438	P	floral whorl development
GO:0048440	P	carpel development
GO:0048444	P	floral organ morphogenesis
GO:0048445	P	carpel morphogenesis
GO:0048449	P	floral organ formation
GO:0048462	P	carpel formation
GO:0048467	P	gynoecium development
GO:0048479	P	style development
GO:0048507	P	meristem development
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065001	P	specification of axis polarity
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0090567	P	reproductive shoot system development
GO:0099402	P	plant organ development
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0090696
GO:0090697
GO:0090698
GO:0090701
GO:0140110
GO:1905392
GO:1905393

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network