Detail information of g156922


Location
GeneChrStartEndStrand
g156922Scaffold_45211:HRSCAF_428297394104412341-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrCBI27037.33.0e-204unnamed protein product, partial
SwissprotQ13523.31.0e-108PRP4 pre-mRNA-processing factor 4 homolog
trEMBLF6HFP02.1e-204non-specific serine/threonine protein kinase

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT3G25840.166.320.0 670Protein kinase superfamily protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag156922.t1; g251934.t1
Allium fistulosumAfisC4G06162; AfisC8G02348
Allium sativumAsa1G02886.1; Asa5G05196.1
Arabidopsis thalianaAT3G25840.1; AT3G25840.2; AT3G53640.1
Oryza sativaLOC_Os12g44330.1; LOC_Os12g44330.2

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00069.22PkinaseDomain7831097158.81.5e-46

Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0008152Pmetabolic process
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006464Pcellular protein modification process
GO:0006468Pprotein phosphorylation
GO:0006793Pphosphorus metabolic process
GO:0006796Pphosphate-containing compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0008150Pbiological_process
GO:0009987Pcellular process
GO:0016310Pphosphorylation
GO:0019538Pprotein metabolic process
GO:0036211Pprotein modification process
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043412Pmacromolecule modification
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044267Pcellular protein metabolic process
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0071704Porganic substance metabolic process
GO:1901564Porganonitrogen compound metabolic process

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K08827PRPF4B; serine/threonine-protein kinase PRP4EC:2.7.11.1 --

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.