result

Gene information

Detail information of g157227

Location

Gene	Chr	Start	End	Strand
g157227	Scaffold_45262:HRSCAF_428348	112365	114784	+

Sequences

CDS

Protein

Gene

>g157227.t1
ATGAAGCTAAATTGCTTGGACATTTATGCCTCAGCTCAATACAGGTATTGCAGATCCTGTACTTAACAAATTCTTATACACTGATATGCCTTCAAAATTAAATGACGTGTGAAGTAAAATCAATGTTGAAGAATTTAAATGCTTTTAAATCCATTGTATTATATGGAGGAAGAAGTGAGCATATTGTACAAGCGCTCTTGAATGTCAATAGTATGCTAAATGTACTTGCAATCTGTTGGTTTTTGGAAACGCTCACATTCTAGAAGCTACCGACCAACTCTTCTCCAACTTCGGTAGAAGTTGAAGTAATTTAATGGCAGTGGAAGGTTTATGTTAGGTTCGCACAAGAGTACTTGTATTTTTCTTGAGTATCATTCACAATATGTATGCTTAATTTTCAATCATAAATGACGAAGAAAACTACTTTTTTCTCAAAATAAACAAAAGCTTTTCTGGATAAAAAAAATAAACAAAGTTGTAAGGAATATTAGATATATTAGTCCTATGTACAACACAAAAACCTAGTTAGTTACCTATATAAATTTGTACTGAAGTTGTTGGTGATTTATTACAGAATTTGTGGGTTTGTTGAGAAACAAGCACCTTTTAAAGAGAGAAAATTAGAACGAACTATCTTGGACCAGATGAAAAATATCATCACCTCGTCCTTCACAGTTTTCTTTCATGAGAATAAAATCATGAGTGTTTATATTCATAATACATTTCTTTTCCACTAAACTTAGCAATCAAAAGAAACCATAATTACACCCATCATCTCCATAAATACCATCCGAACTCATTCATTTTTCCTTTGTATTTGGTGCTTTTCTTGCCGTAACTCACAACATTGTTGCAAATTCAATGGTATATTCCCTTCTCTACTTTCATGTGCTTTAAACTCTCATAGCATATGATTACTTGCCTCTTCCACTTCTTCTTCTTTTTATTATTGTCTTTGTTCCTCTTCGTCAACTCATCAAGCCTTCGAAAAACTGTACCATCCCTAACAAACATGTTTGAGGACTCCGGTTATTTTGATCCCTCCCAAGTAATTCAAGACAATTACAGTGATGGGGCGGTATTAATGGAAGATAATATACAAATTGATATTGCGGATGCCTCAGGCTTAAATCTCGACCATCTTGGTTTCGACATGCACGAAGATGTCAACATTGCACCGACAATGGATGCTACGAATTGGGAGCCTCCAATCAATCAGCAGTACAGTCAAACATATGGCCCTTCCCCAGACCTTTTGAACTTAATGCAAGTGCCAACTTATCATCAACCACCTGAAATGGGCCCAATGTTCTACGATCCGGCTATGAATACAGGCTATAATGCTGGGCCTCAAGCGGGACCTGATCTGTTGAGAGACTTATATCAGTCTCTGCCTCAGAGTTATGGTTTATTTTGTGGAGTGGAGGAGAGAGAAAACAATAATGGAATATTTCAAGAAATGCAGTTTGTCGATGGAGGAGTTATTGATTATAGAGGAGTAGAAATTTCTAACAATTTGGGAAAAGGAGAGGTCAAAGGAAACTTTTGCACTGAAAAGCACAGGAGAGAGCAGTTGAATGAGAAGTATAAGACTTTGAAATCACTAGTTCCTACTTCTACTAAGGTACCCTTTTTGATATATTAATTTCAACCTTTATCATCTTTTTAGAACCTACGGACTGAAACAGTAAATATATGTTACATGCACTAAACCATATGTTTGCTTTCCAACAATAAAATTTTGCTGTTTTTTCTCCACCTTTTTTATATCTTTTCTAATTACAAGCTTACCCGCTATTATCTTTAGCCTTCACCTTTATTCTATTCAAAACATATTCTCTTGCCATGGCTATCTATTTGCAATTAAGTATAAGATGCTGAATGATTCCATATTATGGGTTTGATAGTATGACGAGTCAATCACCTGTCCTCGAATTCTTTTAATTATAGAAACTTGAATGCAAAAAATACAACAATAAGATGCTTAACTGGCACATGGTATTTCATCCTTAAGCATGCTAACCATAAGTTTGTTCATATAATTGTATAGGGAGACAGAGCATCCATAGTTGGAGATGCAATAGAGTACATAAAAACTCTTCTCCAAAATCTAGAGGAACTCAAAACACAAGTAGAGAAAAAGAAACATGGAATCACACATCAAATACCGAAAGCTGAAGATATTGATGCAGTGGGTGACGTGGAAAGTTCATCGATAAAGCCTATGCAAGATAATGGATCATTAAGATGCTCTTGGATTCAGAAGAAGTCTAAAAAAAGCATCGTTGATGTTCGTATCATCGATAATGAAGTGAATATCAAGCTTACTCAGATGAGGAAGTCTAATTGCTTGCTTTATGTAGCGAAAATGTTGGAAGAGTTCCAACTTGACATTGTTCATGCTTCTGGAGGGAATATAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020260581.1	3.2e-47	transcription factor EAT1-like isoform X1
Swissprot	Q7X8R0.2	1.2e-25	Protein ETERNAL TAPETUM 1
trEMBL	A0A7M3UQH4	1.7e-50	BHLH transcription factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G06170.1	35.32	2e-22	103		basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g157227	AT1G06170.2	218	116	8	104	310	123	326	35.32	2e-22	103
g157227	AT1G06170.1	218	116	8	104	310	123	326	35.32	2e-22	103
g157227	AT2G31210.1	284	134	14	66	310	77	341	32.39	9e-20	94.4

Ortholog group

Species	Genes
Allium cepa	g157227.t1; g425426.t1
Allium fistulosum	AfisC5G05384
Allium sativum	Asa0G03777.1; Asa6G05730.1; Asa7G07433.1
Arabidopsis thaliana
Oryza sativa	LOC_Os04g51070.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	205	247	38.6	7.2e-10

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0008150	P	biological_process
GO:0009555	P	pollen development
GO:0009791	P	post-embryonic development
GO:0009889	P	regulation of biosynthetic process
GO:0009908	P	flower development
GO:0009987	P	cellular process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010941	P	regulation of cell death
GO:0010942	P	positive regulation of cell death
GO:0016043	P	cellular component organization
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022414	P	reproductive process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0033036	P	macromolecule localization
GO:0033037	P	polysaccharide localization
GO:0042545	P	cell wall modification
GO:0043067	P	regulation of programmed cell death
GO:0043068	P	positive regulation of programmed cell death
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0045229	P	external encapsulating structure organization
GO:0048229	P	gametophyte development
GO:0048367	P	shoot system development
GO:0048437	P	floral organ development
GO:0048438	P	floral whorl development
GO:0048443	P	stamen development
GO:0048466	P	androecium development
GO:0048518	P	positive regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0048608	P	reproductive structure development
GO:0048653	P	anther development
GO:0048658	P	anther wall tapetum development
GO:0048731	P	system development
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051179	P	localization
GO:0051252	P	regulation of RNA metabolic process
GO:0051641	P	cellular localization
GO:0052386	P	cell wall thickening
GO:0052543	P	callose deposition in cell wall
GO:0052545	P	callose localization
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0070727	P	cellular macromolecule localization
GO:0071554	P	cell wall organization or biogenesis
GO:0071555	P	cell wall organization
GO:0071840	P	cellular component organization or biogenesis
GO:0080090	P	regulation of primary metabolic process
GO:0090567	P	reproductive shoot system development
GO:0099402	P	plant organ development
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network