Detail information of g159655


Location
GeneChrStartEndStrand
g159655Scaffold_45603:HRSCAF_428689225528241840-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_010924372.11.1e-26high mobility group B protein 14
SwissprotO64702.22.5e-20Nucleosome/chromatin assembly factor group D 14
trEMBLA0A6I9RD857.8e-27high mobility group B protein 14

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT2G34450.161.365e-28 119HMG-box (high mobility group) DNA-binding family protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag159655.t1
Allium fistulosumAfisC5G01791
Allium sativumAsa5G01668.1
Arabidopsis thalianaAT2G34450.1; AT2G34450.2
Oryza sativaLOC_Os01g47600.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00505.16HMG_boxDomain4511363.02.4e-17

Gene Ontology
AccessionOntologyName
GO:0003674Fmolecular_function
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0006355Pregulation of transcription, DNA-templated
GO:0008150Pbiological_process
GO:0009889Pregulation of biosynthetic process
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0031323Pregulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0080090Pregulation of primary metabolic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K11296HMGB3; high mobility group protein B3EC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.