result

Gene information

Detail information of g166424

Location

Gene	Chr	Start	End	Strand
g166424	CHR1	195582219	195585319	+

Sequences

CDS

>g166424.t1
ATGTCCGAAGATGATGAGAGACATAGGATGCAATTGCTTGATTTAAGCGGTGCATTGATTTGCTTCTACACAAATTTTTGCCCGGAAATTCGACTCCTCTCAACTCATTTCCTTTTCTCTTACGCTTTTTCTCTCAATAAAGTACCTAATTTTTATCAGCACTGCCAAAAGATGTGTGGCGGTGCAATAATCTCAGAGTTCATCCCGCCTGTAGCAGAATACAGAAGGGCCACTGCAGGCGATCTTTGGCCTCAACTGAAGAAGAAAAAATCGTTCGGATTTGTTGCTGAGTTAGAGAAGAAGCGGCCGATTGTGATTGATGACGACGACGACGACGACGCTCACTTTGAAGCAGATTTTCAGGAGTTCAGTAATGAGAAAGACGACGAGTTTGATACTTTGGAGGTTTTCGATGTAAAGCCTTTGTCATTTCCTAATAAGAAAGCAGCTCAATTGAAAGGAACTGTAAAAGAAGTAGAAACCAAGGGTTCAACCGAGATATCCACAAAAAGGAAAAGAAAGAACAAATACCGAGGCATCCGCCGCCGTCCATGGGGCAAATGGGCCGCCGAAATCCGAGACCCAAAAAAGGGAGTCCGGGTCTGGCTAGGAACATTCAACACCCCCGAAGAAGCAGCACGGGCCTACGACGCCGAGGCCCGCAAAATCCGTGGCCCAAAAGCCAAGGTCAACTTCCCCGACACCCAAACCCAAATGGTCCCGAAGCCCACAGCCCAAAACATAGACCCCAACATCAACCTCGACCCCGAGTTCTACTCCACTTTCGGCTTCTTCGAGGAGAAGAGCAACAACTCGATCAAAAACGAAGAAGGAAGCATCGATATCAGTATGGATTATTCCGACTTCAGCTGGGAAGAGAACGCATTCAATGATGGCATTGGGCAGAAGAAACTGAAGAACAATGCAGGAGAGAGCGTGATGACTACTGATGTATCTGAAGAGATGTCTACTTTCGACTCGTATATGAGTATTTTGGAAGTTCCGGAAACGCCCTTTGATGGCTTGTTTGGTAGTGGACTTGATGGTCAAGATGGCGGCGGTTTATGGAGCTTTGATGATATGCCGATGGTTGGTCATTACTGA

Protein

Gene

>g166424.t1
ATGTCCGAAGATGATGAGAGACATAGGATGCAATTGCTTGATTTAAGCGGTGCATTGATTTGCTTCTACACAAATTTTTGCCCGGAAATTCGGTTCTTATAGCTTTGTCGTATGTTAAATGGATACGTAAACCGCACTGTTATAATAAATAACAGAAACGACACTATCAGAAAGCACCGCTAAAATCACGTCTCTTTTCTATTGTGTAGAATAAACTATGAATGTAGCATTGACAAATTTATCTTGTTTTGCTATTTTTAATTTTGCACTAGACTTTTACAGCTAATAATCAATAAAAATAAAATCTAAAAAAAGAAAAATGTATAATTAAAATGGTAAAAATTTCCAATACATGAATAAAGTCCTAAAAAAATTATATCTAAATAAATATTAAATAAGATATTGTAAAGATTTTCAAATGCGCAAAATTTTGCAATTTACATATGGTTTTATTAAAATGCTAACTAATTACATTCTTAACTAAGATTTGCAAAGTTATCTACTGCACTTGACCTTATAAATAATTATCAACAACCGCAGACTCCTCTCAACTCATTTCCTTTTCTCTTACGCTTTTTCTCTCAATAAAGTACCTAATTTTTATCAGCACTGCCAAAAGATGTGTGGCGGTGCAATAATCTCAGAGTTCATCCCGCCTGTAGCAGAATACAGAAGGGCCACTGCAGGCGATCTTTGGCCTCAACTGAAGAAGAAAAAATCGTTCGGATTTGTTGCTGAGTTAGAGAAGAAGCGGCCGATTGTGATTGATGACGACGACGACGACGACGCTCACTTTGAAGCAGATTTTCAGGAGTTCAGTAATGAGAAAGACGACGAGTTTGATACTTTGGAGGTTTTCGATGTAAAGCCTTTGTCATTTCCTAATAAGAAAGCAGCTCAATTGAAAGGTATTATTGTTTTACTTTGTTAAAATTTGACTTTGAGCTTGCTTAGATTGAATTTACTGCGAATTTGTCATGGGTTTTGGTTGATTTGGTCTGCTTTGGTTTAATTTGTGAGTTATTGCTGAGGATTTCAATATTGAGTAGTAATTCGGTTAAGTTCTTGTTGAGCTTAGTTTATTTGTTTAATAAGTTAATGACTGTTCACAAAACCGTAGTTGACAGAAATTATTCATCATTTGAACCAAGAGAGAATTTCTCTGGGCGTTGATCACCATGTTAATTACTAGATGGAAATATTGATTCTTATAACTTCATTTTAGTTTTGGAGATTGATTAATATTTCATTTTTAAAAATTTCTACAAACCTTTAGTTGTTAGGTTGGTTAACAAGCTCCTCTTGTAAAATTTAATTGCTATATCATCAATTAAATGGTATTGCCTTTACTTCTTGTTTTCTTCTCAGACATCAACTTGGGTGAATATATTTATGCTACCATTTTTTTTAATATTAAAATAAATTCCTTGATGCAAAAATGATCAAATGTAATGCTAAGGACTCTAATTCTGTTATGTGATAGCATGGAGTGGTATTCATTTAATTTCAAGCATGTTCAATAGGGCGTATATTCATTTTTAGGGTTCAAAACACAGCCCGACTCAGATTAAACATATTGGTTTGTCTTAATGTGATGTCAAAGCTCACTCATAAACTTGTTTGTATATTCTGCCAAATTTTACCAATTAACACAATATTATTGACTTATTATTAGCAAAGGATATTCAATAATTGTGCATGATCATATAAGTTATCATACCAAGCTTTGATAATCTTGCACTATTCACAAACCATAACACGGTGAACTGGCTAAGTAGTATATGGTATGAAGTGCAATGTTTTGATAATATTAACTTTCTTATTTTCTTTTTTCTTTTTTAAGCCATAAGTTGAATATTACATGAAGATATTGAAAAGCATTAACCTTATCAGTCCGTATTGTTTCATTAAATAGTGTATATTTAATTTGTTTTGACAAAACAATCCCGGGCTAATTCATAAACTTCATTCTAGGTTCATGTGTTTTCTTGTTCGATGATGCCAGTCGCTAGGCAGACAATAGTAATATCTACTTGCACCATATAACCCTTGTTTGTTCATTGCATGCCTATGTATATAACTATGTTTTATTGCATCATAACATCTAACACCCTATTTGCACCTTACTACAGTTTGTTGACTGAATTAATCAATGACTATCAATGATTCTTACGTGATATTTTGGTAATTTGACATATTATCCGCCATAACTATTGTGAATCATTATATATTAACCATGATTCCATCCAATAATTTAAACCAAACTGAAAATGAGATGCTGAATTTAAGGTTTGTAATTGAACCAAATTCACATATACATAACTTTCGCACGATCATGAGGACTGAGGAGCATAATTATTAGTAAGCTAAACTTGTTAAAACTTGCCCTACACCATATAACATATACGATCATCAGATTTTCTTGATGACAAAGCATTCATTTATTATCATGATCAGGAACTGTAAAAGAAGTAGAAACCAAGGGTTCAACCGAGATATCCACAAAAAGGAAAAGAAAGAACAAATACCGAGGCATCCGCCGCCGTCCATGGGGCAAATGGGCCGCCGAAATCCGAGACCCAAAAAAGGGAGTCCGGGTCTGGCTAGGAACATTCAACACCCCCGAAGAAGCAGCACGGGCCTACGACGCCGAGGCCCGCAAAATCCGTGGCCCAAAAGCCAAGGTCAACTTCCCCGACACCCAAACCCAAATGGTCCCGAAGCCCACAGCCCAAAACATAGACCCCAACATCAACCTCGACCCCGAGTTCTACTCCACTTTCGGCTTCTTCGAGGAGAAGAGCAACAACTCGATCAAAAACGAAGAAGGAAGCATCGATATCAGTATGGATTATTCCGACTTCAGCTGGGAAGAGAACGCATTCAATGATGGCATTGGGCAGAAGAAACTGAAGAACAATGCAGGAGAGAGCGTGATGACTACTGATGTATCTGAAGAGATGTCTACTTTCGACTCGTATATGAGTATTTTGGAAGTTCCGGAAACGCCCTTTGATGGCTTGTTTGGTAGTGGACTTGATGGTCAAGATGGCGGCGGTTTATGGAGCTTTGATGATATGCCGATGGTTGGTCATTACTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020256981.1	3.1e-67	ethylene-responsive transcription factor 1-like
Swissprot	Q9SSA8.1	2.8e-36	Protein RELATED TO APETALA2 12
trEMBL	D6MKN8	5.2e-72	Transcription factor (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G16770.1	45.25	1e-31	134	ATEBP;EBP;ERF72;RAP2.3	ethylene-responsive element binding protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g166424	AT3G16770.1	179	53	4	58	234	1	136	45.25	1e-31	134
g166424	AT1G53910.2	287	110	10	58	295	1	277	41.11	5e-31	132
g166424	AT1G53910.1	287	110	10	58	295	1	277	41.11	5e-31	132

Ortholog group

Species	Genes
Allium cepa	g166424.t1
Allium fistulosum	AfisC1G05803; AfisC3G05538
Allium sativum	Asa7G07658.1
Arabidopsis thaliana
Oryza sativa	LOC_Os02g54160.1; LOC_Os02g54160.2; LOC_Os06g09390.1; LOC_Os06g09390.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	176	225	48.4	7.4e-13

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0001666	P	response to hypoxia
GO:0003032	P	detection of oxygen
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0016020	C	membrane
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006950	P	response to stress
GO:0008150	P	biological_process
GO:0009593	P	detection of chemical stimulus
GO:0009628	P	response to abiotic stimulus
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0036293	P	response to decreased oxygen levels
GO:0042221	P	response to chemical
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043565	F	sequence-specific DNA binding
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051239	P	regulation of multicellular organismal process
GO:0051252	P	regulation of RNA metabolic process
GO:0051606	P	detection of stimulus
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0070482	P	response to oxygen levels
GO:0070483	P	detection of hypoxia
GO:0071944	C	cell periphery
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000026	P	regulation of multicellular organismal development
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2000280	P	regulation of root development
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network