result

Gene information

Detail information of g168250

Location

Gene	Chr	Start	End	Strand
g168250	Scaffold_46734:HRSCAF_429820	255427	261236	+

Sequences

CDS

>g168250.t1
ATGTATCCTTCTCACCTTTTGAGCAATTCCAGAGTTAGCAACAATGAAGAGGTGCAACTGGGGTTTAATGTTGGAAATGCTGTTTTTGATCTCACAAGAAGTAACGCTCATGCGTTTCATAATACAGAACAAATACAGCAACTTGATAATTGGGGTGATAACAGCATGGTTGTAGCCAGCTCCTTAATTGATACATCAACTGATACTGAAATTAATGGCTCAAATCAGATTTTGAACAATGGTGTGCGCACGGCTGCTATTTCTCCTAATTGTTCAGCTGTATCTCAAGAGAAAGGAGAGGACTGTAGAGTGATCCGAAGACTTGCTCAGAATCGGGAGGCAGCAAGAAAAAGCCGTATGAGGAAAAAAGCATATATTCAGCAACTAGAGAGTAGCCAGATAAAACTGAGTCAATTGGAACAGGAGCTTCAACAAGCAAGGCAACTGGGTATATTTATATCCGGAGAAAGCTTACAAGATAATGTGTATTCAGCTGGAGGAAATGGTGCCTTAGCCTTTGACGCGGAGTATGCACGATGGCTAGACAAACATCAACTACAAATCAGTGATCTCCGATCTGCTTTGAATTCTCAGTTAGGCGATGAAGACCTAAGAGTTTTAGTTGATGCCCTGATGTCACATTATGATGAACTGTTCAGGTTAAAAAGTATAGGAACAAAGTCCGATGTGTTTCACATGCTTTCTGGAATGTGGACAACTCCAGCCGAAAGGTGTTTCATTTGGATGGGAGGCTTTCGTTCCTCCGAACTTCTAAAGGTACTTGCAGGCCATCTTGAGCCATTGACTGACCACCAACTAATGGGTATCTGCAATCTTCAACAATCTTCACAAGAAGCAGAAGAAGCATTATCACAAGGAATGGAAGCCCTACAGCAATCTTTAGCAGATAGTCTCGTGGCCGCGGCTCCTAAACATTCCGTAAGCTCTGACAATGTTGCAAATTACATGAATCAGATGACCATTTCTATGGGCAAGCTGACCACACTTGAGAATTTCCTTCGCCAGGCCGATCTTTTGAGGCAGCAAACATTACATCAAATGCATCGCATACTTACCACACATCAGGCAGCAAGAGCTTTGCTTGTGATCAGTGATTATTTCACGCGTTTGAGAGCATTAAGTTCACTGTGGTTAGCTAGGCCAAGAGGATAA

Protein

Gene

>g168250.t1
ATGTATCCTTCTCACCTTTTGAGGTACTACATCATAACTGCACGTGTGTGTGTGTATATACACATACTTCCATACTTTGATGGCATATACTCTTTATTTCAAACACCTTTCGTCTAATCCATTCGTAATTGCTTAGCAATTCCAGAGTTAGCAACAATGAAGAGGTGCAACTGGGGTTTAATGTTGGAAATGCTGTTTTTGATCTCACAAGAAGTAACGCTCATGCGTTTCATGTAATATTTTGTTAGAACTTCAAATCGTATTATTTTGAATGATTATTTCTTATGTCTAGTAATCCCTTTGCATGTCAATTTTAGTAGTTCTGCACATGGAGTAATACATTTTTAAACGTTGTAAATTGTTTATGAACAGTCCAAACTGTAATATTAATTCTTTCTTTCTTTCTTTTTTGGTTTTATATTTTGTTTGTTTAAATGCTTTTGCAGAATACAGAACAAATACAGCAACTTGATAATTGGGGTGATAACAGCATGGTTGTAGCCAGCTCCTTAATTGATACATCAACTGATACTGAAATTAATGGCTCAAATCAGATTGTAAGTAGTTTGCATGCTAAGTTAATTAAGGGAAGTTTGATTTCTCTGTATGATTTCGTTTGATTTCAGTTGAACAATGGTGTGCGCACGGCTGCTATTTCTCCTAATTGTTCAGCTGTATCTCAAGAGAAAGGAGAGGACTGTAGAGTAAGATCTATCAACCTTGTTCCTCAATTTCTTGATGTTTTAATTTCACACATATTATAAACTATTAGCATTGTTAGTTCTAGTTGATTAACATTGAACCTAACACATGACTTAACAAACTGTTTTTGAGATTTGAATTTATATAAGTTACTTATTAATTAAAGGTTGCTAAATGCTGTATTCTCTTATAAATTTAAATTGTGTATTGGAAAAGCTTATATGTTATGAAGTTGAACTATGATTTCTTTTTAACATGTTAATTAGCGCTAACAAGTTGTTAATTTCGAGATTTGAAGTCGTGATCGATCTCACAGTCCAAACCATCAACCAAACCTTATTGGCTTTCGCCTTTAATTTCATTTTTATTTGCCCAACAGCCTCAATTAATACAACCAAACATATAACCCATCTTTTTCCTAAGAGTAAGAAATAAGAATTATGCAAATATGGTTTGAGAAAATCTCATACAGGATTTTTTCGTCTTCCCCTGTTTACTCAAATGTATATTTTGAGTTGAAGTCCTTTCAATATGGACTGCAGGGGAAACATATATGTAGTTAGTCTTCTCCTTGATGTTCATTAAAACTGAAAAATTGTTACTTAATGAATAATTCTTTAGGTGATCCGAAGACTTGCTCAGAATCGGGAGGCAGCAAGAAAAAGCCGTATGAGGAAAAAAGTAAGAGTAAAATTCAAGTCAAATCGTGCCTATGTAGTTTTTTTTCTTCTATAATTCTCGATTGTTCTAGTTATTATTGTACTTTATTGGTGTTAAGTGCTTAAAATTCAATATTTGCATTGTATCAAAATGGCACTCAGATTCAGGGATTCAGTTAATGCATAAGCGTTAATTTTGTTTCATTCTAATCCAATTTTTTAAAAGGCATATATTCAGCAACTAGAGAGTAGCCAGATAAAACTGAGTCAATTGGAACAGGAGCTTCAACAAGCAAGGCAACTGGTAAGTTTAGTTTTTGTTATTCACTTTCCTTGTTTTATTTATCTACTGTAGTTTCTTGTTACCACTTACAGTTATCATGCAGGGTATATTTATATCCGGAGAAAGCTTACAAGATAATGTGTATTCAGCTGGAGGAAATGGTTTGTTATCTTATAAAACTGAATATAATGTTTTGGTCTATGATCTTGGGTTTGTTAATTTTCGCTCTAATGAGCTTATAATTATGAATATTTAAGGAGTTTGCATACAATGCCTATCAAAACTATATATTCTAAAGGGTTAAACTGCCTACCAATGTCTCTTGGTGTTTTCATATTTAAATTGTTCAGCGGCCACTGAGATCACTTGTCCCAAAATGTTATTTCTATCTCTAGCTTTCGTTTCTGTCTTAGGCAAAAAGATGTGACATGCGTTAATTTTAAAGGCTCCTAATTATCTATATTACATCGAATTTCAATGTAAGACAACTTTACTAGCGTTGGAATTATTCATTCAAAGCTTCTTTAGAAAGCAAACTCGCTAAAAAGTTTGGAATTTATTATGTAAGACAACTTCACTAGCGTTGGAATTATCCGTGCGTTGATTTTAAAGGCTCCTAATTCTCTATATTACATTGAATTTTAATGTAAGGCAACTTCACCAACGTCGGAATTATTCATTCAAAGCTTCTTCAGAAAGCAAACTCATTAAAATGTTTGGAACTTATAATGTAAGACAACTTCACTAGCGTTGAAATTATTCAATAAAAGTTTCTATAGAAAGCAAACTCATTATAATTTTTGGAATTTAATAATCAAATCTAACACTCATATGTACCCCAACCGATCCATCGAATTATTGCATTTTGAAATTTATTTAGACGATCACCAACAAATTTTATTTATTTTAATCTCAAATGCACTAATTTTACGCCTTGCATGAAGGATTTCTGGTTCATTCGAAGATGTTAGAAAATAATTACATATAATAGCAGTTTATCTCAAATCTCTCTAGAAACCTATGCAATTGGGTACAAGTGAGTAAGATACAAGTCAAAGAAATGAACATCAGTTAGCAGTCCAAAACCAAATAAAAGTAGTAAATTGAAATAAACGAGTGATACATATATATACATTTATAGCGGCATCACTATCGACGTGATAATGTACATTCACTTTGAAAGAAGAATTTTATCTCAAATTTTAGAGGGAATCACAAGAGATTGATATATCTGTTTTAATCGAGGTTCAATAACTAATTAAAAAAACTAAAATCAGTCTCTAAATAATGATTTCATTTACGTAGAGATTTGGATACTTGAGGTTGAAAGAAACTTTCCATAGCACATGTATTTTTTAACATTTAGTACCTTTCAGTATGCATACGCTTAATAGGCATGTCTTTTAATGACTAATTAATTTGGAAATTGATTAGTTACATTTAATTTTTGAAATTCATTTCCTTTTATGTAGATGATCACTTATCTTGTTATTTAATGCAATAAATTTGCATTTGGTTAGTGCAATTGAATTTTAACAAAATCCACAATTTACGCTTTTCAACTAATTTAGCATATATTTGCGTTACAACTTCAACACTTAATCTTATTTGAAATATATATTCAACCAAAACCTAAAATCTGCATTCGACCAATATCCATCAAATCCAAAATGATACAAACTCCGGCAAAACCTAAAATTTGCATTCGACCAATATCCATCAATTTTTCATAGATGCATCAGGTGTTCGAACCCCTGATGCATCTACGAAAAATTGATGGATATTCCAGACGTCCTTTTACATCTTAATGAGTATTCCTCAAGCCTTTTTGGTGCACACCAAAAAACGATGCAGTTGGGAATTAGGTTGCTTTTCGCAAGTGTCTTCTTCTCCCAGAAGCGATGAGTGACCGCTTTATCCAAATTTTCACCTAGGCTTTTGCTCAAGTCACTTTAGAGATATTGAGTCATCACCGTTTTCTTTAGCAGGAGGATCCCCGACAATCATTTTCTTCTCCATTCTCAATCTGGATTCATGCTTTGGTCATGCTATGTTATATCGGTTCTTCGAACCTTAAGCTTTGATACCATGTTAAGCGTCGACTTTCCAGAACGTCCCATATGTGTGCACTTTGTTGAGTGTTGACGAGACCATGATGCTTTTAATGTGCCAGTGTCCCCGTTGAATATTCATACATCGTCATTCAATTGACGTATACATGTTCTTTATAGTATTTTCTTATAATTCAAGAAATCCTTAATGTTACGTTTTACCAAGCACCAATTTCATGTATTCAAGAAAAAGCTACGTTTGGGCTTCTGGACAGAAACTTGGAAAAAGTTTTGTTTGTGATTTTGTAGGATACATTTTCAACTATGCACACTTTACATTGTTTCCAATCCAAACCTGATCTATTACATTAGCCTTTTGCTTTTCATATCCAAATCCGATTTGCAATTTGATAATCACCAAAAAAAAGATAACTCTTTATCTTACTCTAATTATATTTGAAATTTCATTCGATTGAATAGCCGAAAATTAAGTTGTGATTGATGGAGACAGGAGGAAATAAATGTTTGGAGACAGTGGATGTACTTGTACTTCATCAAACAGCGTAATGTACTTGTACTTTACTATTATAATATATTAAAACAATAAATCAAACATTCAATAATTAGTCGGGGATTTTCATGGGTAATAAGATTTAAGGACACAATTTTTGAAAAATTAGTTTTAAAGATATTTTACAGGAAAAAGATAAAAGAATTTATCATTTTTCTGTATAACTTAAAACGATAAATGAATTTATCATTATGCTTTAAATTGTCCTTAAAACTAATTTTTTAGAAGTGTTGTCCTTAAAACTTATTACTCTGCAAATAGAAGCCCTTCAACTTAATTTTCATTAATTAGTCAAGGTTCGTCTCAACAAATACCATAGCTATATTGATCGTTAGACTTTTGCATGACTAAATCAGGTGCCTTAGCCTTTGACGCGGAGTATGCACGATGGCTAGACAAACATCAACTACAAATCAGTGATCTCCGATCTGCTTTGAATTCTCAGTTAGGCGATGAAGACCTAAGAGTTTTAGTTGATGCCCTGATGTCACATTATGATGAACTGTTCAGGTTAAAAAGTATAGGAACAAAGTCCGATGTGTTTCACATGCTTTCTGGAATGTGGACAACTCCAGCCGAAAGGTGTTTCATTTGGATGGGAGGCTTTCGTTCCTCCGAACTTCTAAAGGTTAACGACTTTACATTTTTTTTCCTCCTTTTGTAACATTGCAGATAACCATTTTTCTATCATCCAATTACATTTTATGAAAAATGCTCCAGTGCGCATCTGACTTCTTTGTAAACAAAAATTTGTATACTTACCGTTAATTTGGTTGCTGCTTGTTTTAAAAAAGGGTGAGTGTCCAGGTACTTGCAGGCCATCTTGAGCCATTGACTGACCACCAACTAATGGGTATCTGCAATCTTCAACAATCTTCACAAGAAGCAGAAGAAGCATTATCACAAGGAATGGAAGCCCTACAGCAATCTTTAGCAGATAGTCTCGTGGCCGCGGCTCCTAAACATTCCGTAAGCTCTGACAATGTTGCAAATTACATGAATCAGATGACCATTTCTATGGGCAAGCTGACCACACTTGAGAATTTCCTTCGCCAGGTATCATTATATTTCTTTTTCTTTCCCCCTTAGTATGTATTATTCCTATGTCAGTTAACGTTATAACTTCTTTTCTTAATGTAGACTTTGAGCCTTCAGTCCCTATCAATAGTTAGAAGTTTAGCTTTCCTGTCATTTTAAAATCAGGAAATATGAATGTAAACGTTAAAAATCATGACCTTTTATTACCCTAATTCTGTGGAGCTTCATGTCAGTAAAGTTGATGAACAAAAAATAGATAAGCTTAAGCACTTTTTAACAACTTATGCAGTAATATATGGTGCTCCTTTTGTCACTATTCAGAACTGTTCTTTATTTTTCTTTTTTTCTTTCTTTTTCAGGCCGATCTTTTGAGGCAGCAAACATTACATCAAATGCATCGCATACTTACCACACATCAGGCAGCAAGAGCTTTGCTTGTGATCAGTGATTATTTCACGCGTTTGAGAGCATTAAGTTCACTGTGGTTAGCTAGGCCAAGAGGATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020110773.1	4.2e-131	transcription factor TGA2.3-like isoform X1
Swissprot	Q5Z6N9.1	2.1e-114	bZIP transcription factor 47
trEMBL	A0A6P5GYD1	3.1e-131	transcription factor TGA2.3-like isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G68640.1	67.95	3e-115	412	PAN;TGA8	bZIP transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g168250	AT1G68640.1	312	99	1	78	389	141	451	67.95	3e-115	412
g168250	AT5G06950.4	293	89	3	98	389	40	329	68.26	1e-112	403
g168250	AT5G06950.3	293	89	3	98	389	40	329	68.26	1e-112	403

Ortholog group

Species	Genes
Allium cepa	g168250.t1; g335984.t1; g60786.t1; g72979.t1
Allium fistulosum	AfisC2G06918; AfisC5G01010; AfisC7G04286; AfisC8G05968
Allium sativum	Asa1G00060.1; Asa3G01569.1; Asa4G02800.1
Arabidopsis thaliana	AT1G68640.1; AT3G12250.1; AT3G12250.2; AT3G12250.3; AT3G12250.4; AT3G12250.5; AT5G06950.1; AT5G06950.2; AT5G06950.3; AT5G06950.4; AT5G06960.1; AT5G06960.2
Oryza sativa	LOC_Os01g17260.1; LOC_Os01g17260.2; LOC_Os01g59350.1; LOC_Os03g20310.1; LOC_Os03g20310.2; LOC_Os03g20310.3; LOC_Os03g20310.4; LOC_Os05g41280.1; LOC_Os06g15480.1; LOC_Os06g15480.2; LOC_Os07g48820.1; LOC_Os07g48820.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00170.18	bZIP_1	Family	102	143	33.0	4.2e-08
PF14144.3	DOG1	Family	187	262	104.8	1.8e-30

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0009909	P	regulation of flower development
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048580	P	regulation of post-embryonic development
GO:0048831	P	regulation of shoot system development
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051239	P	regulation of multicellular organismal process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000026	P	regulation of multicellular organismal development
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2000241	P	regulation of reproductive process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14431	TGA; transcription factor TGA	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network