result

Gene information

Detail information of g168513

Location

Gene	Chr	Start	End	Strand
g168513	Scaffold_46770:HRSCAF_429856	37850	39360	+

Sequences

CDS

>g168513.t1
ATGAACGCAATTAATACAAAATTGATTTCATTTTTGATCAAAGCAATTCGCAACTCTCAAACTAAAGCAGGACAGAGCAAGACAAAATTGTCAAAAGCCATGGAACAATTTCGCCAAATAGGGGAAGTTCTGGGGAGCTTAAAAGCCCTAATGTTATTCAGGGAAGAAATCAAAATAAACCAAAGGCAGTGCACTCTTTTATACGATTGCTTCAAGTTGGTATTCAAATCAATTGGCGAAGAGATCAAAAAACACCTGAAATTTGACGAGAAGCTCACGAAATGGAGATACCTTGATCAACCCTTGAAAGAACTCTTCAGAATTTTCCGTGAAGGTGAAAAATACATACGCAGCTGCCTGGAACCAAAAGATTGGTGGGGTAAAGCAATTGCCTTGAACGATAGTACAGATTGTGTAGATTTACACATACACAATCTTCTTTGGTGTGTATCAGTAGTAATAGAGGCAATAGAGGCTGCTAGTGAAGTTTCAGGTAGTGACCAAGAAAACATGAACATGAGAAGAATCATGTTTTCAAAGAAGTACGATAAAGACTTGATCGATCCAATACTCTTTCAACATAAGCTCGGAAAGCTCTACTTGGTTTCCCAAGACATGTGTAGAAAGTTCGATTCTGTACTCAAAGAGGATCGATGGTTGATGTCGGAAACCATCAAAGAGATGAGATGCTCGACTTCAAAATCTGTCTTAAAGCTAAGTGAAATCTTGCTTAGTCCAAAAATGACTATCCATCCATGCTCGATGTTACTAAGCTCACCCGACTACCAAGTAAGGCGGAGACTAGGAGGCAATGGCAATGGCAATGGCATAACATGTAAAGAAATTACATGGATGGGGGAGAGTTTTGCTATAAAGCACGCTATAAAAGAAGACGAAATCGAACAACTTCTAAGTGAAGTACTGCTACATAGCGCGCTCTCCCATCCTAATATCATGAGTTACATGTACGCATTTTGCGATCAAAACAAAGAATGCATCGTTGTCATGGACCTCATCCGCTGTGGACATCTTGCTTCAGATATCAAGAGCAATGGAGTACTTGCATTCGAAGAACATCTTCCATGGCGACCTCAACCCTTCTAA

Protein

Gene

>g168513.t1
ATGAACGCAATTAATACAAAATTGATGTATAATACTCTCTGTTTTCCTCACAATTGATCGCCATCCTCGATCGAATTCGTCCTGCCAAAGTTCATTTTTGATCAAAGCAATTCGGTATGTCCGTAATTCTCATAATTTTGTAATTTTTCACGGTTGAATTTCTGCCTAAATTTCTTTTATATACTTGATATCTCATGATCTTGCAAAAAAGTTTGGTACTCTGTGCAATTTTTATTTGTGGATTTAACATCAACCAGTTTTATTCAAAATTTACGAAATCGATCTAATATCATATATTTAAGAAAGGTCTATAGGTTTTGAATAAATATCTTTCTTGTTTATTTACGTTAGGATTGAATTAAATTTAATCTTTTTAATATTTTCAGCAACTCTCAAACTAAAGCAGGACAGAGCAAGACAAAATTGTCAAAAGCCATGGAACAATTTCGCCAAATAGGGGAAGTTCTGGGGAGCTTAAAAGCCCTAATGTTATTCAGGGAAGAAATCAAAATAAACCAAAGGCAGTGCACTCTTTTATACGATTGCTTCAAGTTGGTATTCAAATCAATTGGCGAAGAGATCAAAAAACACCTGAAATTTGACGAGAAGCTCACGAAATGGAGATACCTTGATCAACCCTTGAAAGAACTCTTCAGAATTTTCCGTGAAGGTGAAAAATACATACGCAGCTGCCTGGAACCAAAAGATTGGTGGGGTAAAGCAATTGCCTTGAACGATAGTACAGATTGTGTAGATTTACACATACACAATCTTCTTTGGTGTGTATCAGTAGTAATAGAGGCAATAGAGGCTGCTAGTGAAGTTTCAGGTAGTGACCAAGAAAACATGAACATGAGAAGAATCATGTTTTCAAAGAAGTACGATAAAGACTTGATCGATCCAATACTCTTTCAACATAAGCTCGGAAAGCTCTACTTGGTTTCCCAAGACATGTGTAGAAAGTTCGATTCTGTACTCAAAGAGGATCGATGGTTGATGTCGGAAACCATCAAAGAGATGAGATGCTCGACTTCAAAATCTGTCTTAAAGCTAAGTGAAATCTTGCTTAGTCCAAAAATGACTATCCATCCATGCTCGATGTTACTAAGCTCACCCGACTACCAAGTAAGGCGGAGACTAGGAGGCAATGGCAATGGCAATGGCATAACATGTAAAGAAATTACATGGATGGGGGAGAGTTTTGCTATAAAGCACGCTATAAAAGAAGACGAAATCGAACAACTTCTAAGTGAAGTACTGCTACATAGCGCGCTCTCCCATCCTAATATCATGAGTTACATGTACGCATTTTGCGATCAAAACAAAGAATGCATCGTTGTCATGGACCTCATGTGCAAAGACCTATCAAGCTACATAAAAGAAGTGAGCTGTGTACGGAAAAAAGTATCTATTTCTCTCTTAGCCGCTGTGGACATCTTGCTTCAGATATCAAGAGCAATGGAGTACTTGCATTCGAAGAACATCTTCCATGGCGACCTCAACCCTTCTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020264986.1	2.4e-104	probable serine/threonine-protein kinase roco7
trEMBL	A0A5P1F090	1.8e-104	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G64300.1	49.53	5e-83	304		Protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g168513	AT1G64300.2	319	140	6	34	339	1	311	49.53	5e-83	304
g168513	AT1G64300.1	319	140	6	34	339	1	311	49.53	5e-83	304
g168513	AT5G41730.1	319	144	6	34	339	1	311	48.28	6e-82	301

Ortholog group

Species	Genes
Allium cepa	g168513.t1; g252829.t1; g362944.t1
Allium fistulosum	AfisC6G06025; AfisC7G01683
Allium sativum	Asa3G03502.1; Asa8G01392.1
Arabidopsis thaliana	AT1G64300.1; AT1G64300.2; AT5G41730.1
Oryza sativa	LOC_Os01g43350.1; LOC_Os05g50830.1; LOC_Os05g50830.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF06760.8	DUF1221	Family	54	259	290.4	6.8e-87
PF00069.22	Pkinase	Domain	263	354	29.1	5.4e-07

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network