result

Gene information

Detail information of g168960


Location
GeneChrStartEndStrand
g168960Scaffold_46825:HRSCAF_429911282952288578+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020246971.12.1e-196uncharacterized protein LOC109824734 isoform X2
SwissprotF4IXE7.19.0e-115Repressor of silencing 4
trEMBLA0A5P1E6351.5e-196PHD-type domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT3G14980.147.075e-118 422IDM1;ROS4Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag168960.t1
Allium fistulosumAfisC6G02098
Allium sativumAsa8G04573.1
Arabidopsis thalianaAT3G14980.1
Oryza sativaLOC_Os04g35430.1; LOC_Os04g59510.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF16135.2JasFamily67173948.75.8e-13

Gene Ontology
AccessionOntologyName
GO:0051276Pchromosome organization
GO:0000118Chistone deacetylase complex
GO:0000122Pnegative regulation of transcription from RNA polymerase II promoter
GO:0005515Fprotein binding
GO:0000228Cnuclear chromosome
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000785Cchromatin
GO:0000790Cnuclear chromatin
GO:0001085FRNA polymerase II transcription factor binding
GO:0001103FRNA polymerase II repressing transcription factor binding
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003690Fdouble-stranded DNA binding
GO:0042393Fhistone binding
GO:0003824Fcatalytic activity
GO:0004402Fhistone acetyltransferase activity
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005737Ccytoplasm
GO:0005654Cnucleoplasm
GO:0005694Cchromosome
GO:0043231Cintracellular membrane-bounded organelle
GO:0005813Ccentrosome
GO:0005815Cmicrotubule organizing center
GO:0005856Ccytoskeleton
GO:0005911Ccell-cell junction
GO:0006139Pnucleobase-containing compound metabolic process
GO:0006259PDNA metabolic process
GO:0006304PDNA modification
GO:0006305PDNA alkylation
GO:0006306PDNA methylation
GO:0016570Phistone modification
GO:0006325Pchromatin organization
GO:0006355Pregulation of transcription, DNA-templated
GO:0006357Pregulation of transcription from RNA polymerase II promoter
GO:0006464Pcellular protein modification process
GO:0006473Pprotein acetylation
GO:0006475Pinternal protein amino acid acetylation
GO:0006725Pcellular aromatic compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0006996Porganelle organization
GO:0008080FN-acetyltransferase activity
GO:0008134Ftranscription factor binding
GO:0008150Pbiological_process
GO:0009506Cplasmodesma
GO:0009889Pregulation of biosynthetic process
GO:0009890Pnegative regulation of biosynthetic process
GO:0009892Pnegative regulation of metabolic process
GO:0009987Pcellular process
GO:0010385Fdouble-stranded methylated DNA binding
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010558Pnegative regulation of macromolecule biosynthetic process
GO:0010605Pnegative regulation of macromolecule metabolic process
GO:0010629Pnegative regulation of gene expression
GO:0015630Cmicrotubule cytoskeleton
GO:0016043Pcellular component organization
GO:0016070PRNA metabolic process
GO:0016407Facetyltransferase activity
GO:0016410FN-acyltransferase activity
GO:0016458Pgene silencing
GO:0045892Pnegative regulation of transcription, DNA-templated
GO:0016569Pcovalent chromatin modification
GO:0016573Phistone acetylation
GO:0016581CNuRD complex
GO:0016740Ftransferase activity
GO:0016746Ftransferase activity, transferring acyl groups
GO:0016747Ftransferase activity, transferring acyl groups other than amino-acyl groups
GO:0017053Ctranscriptional repressor complex
GO:0019899Fenzyme binding
GO:0018193Ppeptidyl-amino acid modification
GO:0018205Ppeptidyl-lysine modification
GO:0018393Pinternal peptidyl-lysine acetylation
GO:0018394Ppeptidyl-lysine acetylation
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0019538Pprotein metabolic process
GO:0030054Ccell junction
GO:0031047Pgene silencing by RNA
GO:0031323Pregulation of cellular metabolic process
GO:0031324Pnegative regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031327Pnegative regulation of cellular biosynthetic process
GO:0031974Cmembrane-enclosed lumen
GO:0031981Cnuclear lumen
GO:0032259Pmethylation
GO:0032991Cmacromolecular complex
GO:0032993Cprotein-DNA complex
GO:0034212Fpeptide N-acetyltransferase activity
GO:0034641Pcellular nitrogen compound metabolic process
GO:0036211Pprotein modification process
GO:0042826Fhistone deacetylase binding
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043228Cnon-membrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043232Cintracellular non-membrane-bounded organelle
GO:0043233Corganelle lumen
GO:0043412Pmacromolecule modification
GO:0043414Pmacromolecule methylation
GO:0043543Pprotein acylation
GO:0043966Phistone H3 acetylation
GO:0043971Phistone H3-K18 acetylation
GO:0043972Phistone H3-K23 acetylation
GO:0044030Pregulation of DNA methylation
GO:0044154Phistone H3-K14 acetylation
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044267Pcellular protein metabolic process
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044427Cchromosomal part
GO:0044428Cnuclear part
GO:0044430Ccytoskeletal part
GO:0044446Cintracellular organelle part
GO:0044451Cnucleoplasm part
GO:0044454Cnuclear chromosome part
GO:0044464Ccell part
GO:0044728PDNA methylation or demethylation
GO:0045934Pnegative regulation of nucleobase-containing compound metabolic process
GO:0046483Pheterocycle metabolic process
GO:0048519Pnegative regulation of biological process
GO:0048523Pnegative regulation of cellular process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050808Psynapse organization
GO:0051052Pregulation of DNA metabolic process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051172Pnegative regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051253Pnegative regulation of RNA metabolic process
GO:0055044Csymplast
GO:0060255Pregulation of macromolecule metabolic process
GO:0061733Fpeptide-lysine-N-acetyltransferase activity
GO:0065007Pbiological regulation
GO:0070013Cintracellular organelle lumen
GO:0070491Frepressing transcription factor binding
GO:0070603CSWI/SNF superfamily-type complex
GO:0071704Porganic substance metabolic process
GO:0071840Pcellular component organization or biogenesis
GO:0072553Pterminal button organization
GO:0080090Pregulation of primary metabolic process
GO:0080188PRNA-directed DNA methylation
GO:0090304Pnucleic acid metabolic process
GO:0090545CCHD-type complex
GO:0090568Cnuclear transcriptional repressor complex
GO:0097159Forganic cyclic compound binding
GO:1901360Porganic cyclic compound metabolic process
GO:1901363Fheterocyclic compound binding
GO:1901564Porganonitrogen compound metabolic process
GO:1902494Ccatalytic complex
GO:1902679Pnegative regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903507Pnegative regulation of nucleic acid-templated transcription
GO:1904949CATPase complex
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000113Pnegative regulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0099172

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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