result

Gene information

Detail information of g169365

Location

Gene	Chr	Start	End	Strand
g169365	Scaffold_46884:HRSCAF_429970	41937	42503	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020268794.1	2.1e-52	protein FAR1-RELATED SEQUENCE 6-like isoform X2
trEMBL	A0A8B8Z803	4.9e-43	Protein FAR1-RELATED SEQUENCE

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G52520.1	37.33	2e-06	48.5	FRS6	FAR1-related sequence 6

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g169365	AT1G52520.1	75	46	1	27	100	85	159	37.33	2e-06	48.5

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03101.12	FAR1	Domain	41	101	30.4	4.5e-07

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0007165	P	signal transduction
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007154	P	cell communication
GO:0007602	P	phototransduction
GO:0008150	P	biological_process
GO:0009314	P	response to radiation
GO:0009416	P	response to light stimulus
GO:0009581	P	detection of external stimulus
GO:0009582	P	detection of abiotic stimulus
GO:0009583	P	detection of light stimulus
GO:0009585	P	red, far-red light phototransduction
GO:0009605	P	response to external stimulus
GO:0009628	P	response to abiotic stimulus
GO:0009639	P	response to red or far red light
GO:0009889	P	regulation of biosynthetic process
GO:0009891	P	positive regulation of biosynthetic process
GO:0009893	P	positive regulation of metabolic process
GO:0009987	P	cellular process
GO:0010017	P	red or far-red light signaling pathway
GO:0010018	P	far-red light signaling pathway
GO:0010218	P	response to far red light
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010557	P	positive regulation of macromolecule biosynthetic process
GO:0010604	P	positive regulation of macromolecule metabolic process
GO:0010628	P	positive regulation of gene expression
GO:0045935	P	positive regulation of nucleobase-containing compound metabolic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0023052	P	signaling
GO:0031323	P	regulation of cellular metabolic process
GO:0031325	P	positive regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031328	P	positive regulation of cellular biosynthetic process
GO:0042752	P	regulation of circadian rhythm
GO:0042753	P	positive regulation of circadian rhythm
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048518	P	positive regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051173	P	positive regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051254	P	positive regulation of RNA metabolic process
GO:0051606	P	detection of stimulus
GO:0051716	P	cellular response to stimulus
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0071214	P	cellular response to abiotic stimulus
GO:0071478	P	cellular response to radiation
GO:0071482	P	cellular response to light stimulus
GO:0071489	P	cellular response to red or far red light
GO:0071490	P	cellular response to far red light
GO:0080090	P	regulation of primary metabolic process
GO:1902680	P	positive regulation of RNA biosynthetic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1903508	P	positive regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0104004
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K17604	ZSWIM3; zinc finger SWIM domain-containing protein 3	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network