result

Gene information

Detail information of g169808


Location
GeneChrStartEndStrand
g169808CHR4217089678217126572-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020268254.10.0e+00LOW QUALITY PROTEIN: TATA-binding protein-associated factor BTAF1
SwissprotB5BT18.10.0e+00Protein ROOT GROWTH DEFECTIVE 3
trEMBLA0A6I9RJE10.0e+00TATA-binding protein-associated factor BTAF1 isoform X1

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT3G54280.160.050.02367ATBTAF1;BTAF1;CHA16;CHR16;RGD3DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases

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Ortholog group
SpeciesGenes
Allium cepag169808.t1
Allium fistulosumAfisC4G01354
Allium sativumAsa4G01260.1
Arabidopsis thalianaAT3G54280.1; AT3G54280.2
Oryza sativaLOC_Os02g06592.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF12054.5DUF3535Family7891246320.51.9e-95
PF00176.20SNF2_NFamily14821775206.83.4e-61
PF00271.28Helicase_CFamily1837193953.72.1e-14

Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0003674Fmolecular_function
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005654Cnucleoplasm
GO:0043231Cintracellular membrane-bounded organelle
GO:0006355Pregulation of transcription, DNA-templated
GO:0008150Pbiological_process
GO:0009889Pregulation of biosynthetic process
GO:0009890Pnegative regulation of biosynthetic process
GO:0009892Pnegative regulation of metabolic process
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010558Pnegative regulation of macromolecule biosynthetic process
GO:0010605Pnegative regulation of macromolecule metabolic process
GO:0010629Pnegative regulation of gene expression
GO:0045892Pnegative regulation of transcription, DNA-templated
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0031323Pregulation of cellular metabolic process
GO:0031324Pnegative regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031327Pnegative regulation of cellular biosynthetic process
GO:0031974Cmembrane-enclosed lumen
GO:0031981Cnuclear lumen
GO:0035561Pregulation of chromatin binding
GO:0035562Pnegative regulation of chromatin binding
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043233Corganelle lumen
GO:0044092Pnegative regulation of molecular function
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044428Cnuclear part
GO:0044446Cintracellular organelle part
GO:0044464Ccell part
GO:0045934Pnegative regulation of nucleobase-containing compound metabolic process
GO:0048509Pregulation of meristem development
GO:0048518Ppositive regulation of biological process
GO:0048519Pnegative regulation of biological process
GO:0048523Pnegative regulation of cellular process
GO:0050789Pregulation of biological process
GO:0050793Pregulation of developmental process
GO:0050794Pregulation of cellular process
GO:0051094Ppositive regulation of developmental process
GO:0051098Pregulation of binding
GO:0051100Pnegative regulation of binding
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051172Pnegative regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051253Pnegative regulation of RNA metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0065009Pregulation of molecular function
GO:0070013Cintracellular organelle lumen
GO:0080090Pregulation of primary metabolic process
GO:1902183Pregulation of shoot apical meristem development
GO:1902185Ppositive regulation of shoot apical meristem development
GO:1902679Pnegative regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903507Pnegative regulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000113Pnegative regulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K15192BTAF1, MOT1; TATA-binding protein-associated factorEC:3.6.4.- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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