result

Gene information

Detail information of g174661

Location

Gene	Chr	Start	End	Strand
g174661	Scaffold_47465:HRSCAF_430551	1210229	1212233	-

Sequences

CDS

Protein

Gene

>g174661.t1
ATGAGAAGAGAATCGGAGAAGACAATTCCTTGCGACTACTGCACGAATTCGCCGGCTGTGATATACTGCCGAGCGGACTCAGCAAGACTCTGCCTTTCGTGCGACCGACACGTGCACTCAGCCAACGGTCTTTCTGCCAAGCACGTCCGGTCTCAAATCTGCGCCAACTGCGGGTCTCAGCCCGCGACGTCCAGATGCAGCTCCGACTGTTTCTTGTCGCTTTGTTCCGACTGCGATTTCGACGCTCATGGGTCTTCTGGGTCGGGTAAAGATGAAGGCAGGTCGGGTCTTCATGCTCGGATTGCTGTCGAGAGTTTCACTGGGTGTCCGACTGCGTTTGAGTTGGCGGGTATTTGGGGGTTGGATCTTGCAATTAAAGCTAAAGATGGGTATGATGGACCAGGTTTTGGATGCTTTGGATCTGGATCCGATTGGGGGAATTCCGATTCTTTGTTGGCTGTGGATGCTGTCTTTCAAGTATTTCTTTTGCTTTTACAAACTATTAGCTATATTGAGTTGCTCCGTGTCACTTTTGTGTTGCATTGTCAACTTGTCATACCATATTGCATTAAACGAATGACATTTTATTGCCCAAAAAGAGTAATGTATGGTGAATGATAAGTAAAATATATTAAGAATTATATACCGTGATGTGAATAGTAAAGTTCCTTACAACTTCACTCTCCGCGATATCAAGCTCATTTGGTACTCTAGTTGTTGGGTGACTTATCCCTCCATTTCATATTGCCAAATGAAATATGCATTCTTACTCGGCACTGCAATGTTGGGATTTCTCGATTTTCTACTAAAGACTAAGTAGTTAGGTACCTTGGAGTGCACGGATTTTATAGAATACGATTGGATAGTTATGTTGAAACTGTTGGCACCCCCTCGCATCTCCGCTATGCTCATCTCCTTTAGGATATCTTACGATGTGGGACTAATCATAATCCAATCTACGCACCCACTTTAATACAATGCGAGCCACACACATAACAAGTTAGTCATTTTATATTCTCGGGAACAAGTAATGTGAAGCAGATATTTGGGTGTATATGGGCATTGCTCAATTAAAATATGCAATAATTTGTTGTTTTGGGAGTACCCAGAGAATCAAGATTCGCTTGTTAACTCCGAGGAAGTATGCCCCAAACATATGCAATGATTTATTATCTTAAACTTGTTCTGTAGATTTGTTTATTGTTTAATAATTCTTACATTCCGATATGCTTTCAGGACTTGTATGTTCCTTGTGCGGATATTAAGCAGCAAAAAAACAGTCCATTGTTAGATCAATTGATTGAACTTGCTAATAGGGACTCATCAACGTCAAATTATCAATCAGAGGAAAAACCTGAATCACCTCTTCCATCAAATCTAAGTCCCAGAACTCCATGTAGGGGAAATAGTGGCACGAAAGATCAAGAAGAAACTAAACAAACAGTTGAACAAATACCAACGTTTACTGCATTGCTTAACATGGCAGCTCCTACAACCAAATGGGCGATCGAAGATGATGAAGATACTATGTGGAAAAATATTGGTCCTTCTAACGACCATGGCACTCAGGTTTGTATCAATTGTGAAAATTAGTTTCATTAAAAATAATTACAAGCCAATTTTAGAAAACTCTTAAAACTTATCTGTAATTGTTCATCAGTCTAACATTTCAATTTCTGTATTAATTAAATTATTTATAGTGAAGTGAACTTCAAGCTTTTCACACAGTTAATCGGTTAAGTTGAATGTCAAGTAAGGAAATATGTTCATGTTAGTTGTTAGGGATTATTTCTTATAATTTGCGGGTGGTTTCTGGAAAATAAGGAGTGAGCTTATTTGCGAATGGAAATTTATACCTCTTCATTTTTCAACCTCTTCATTGCCTTGAGTCTAAAAATAGCAAATGGCTCTATGTAATCTTCGCGATGAAGACCAGTCTTTGGATGTATCTAAGTTGTTAAGTGTAACTCACAGGTCGTTTTCTTGTAGTTATGTTGCAGCTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020261158.1	6.2e-61	LOW QUALITY PROTEIN: zinc finger protein CONSTANS-LIKE 14-like
Swissprot	O22800.2	2.9e-15	Zinc finger protein CONSTANS-LIKE 14
trEMBL	A0A444E376	7.1e-35	B box-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G33500.1	47.20	1e-36	150	BBX12	B-box type zinc finger protein with CCT domain

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g174661	AT2G33500.1	161	71	4	5	164	6	153	47.20	1e-36	150
g174661	AT2G33500.2	161	71	4	5	164	6	153	47.20	1e-36	150
g174661	AT1G28050.1	125	51	2	5	129	3	120	53.60	2e-34	142

Ortholog group

Species	Genes
Allium cepa	g174659.t1; g174661.t1
Allium fistulosum	AfisC4G05217
Allium sativum	Asa0G05650.1; Asa5G04357.1
Arabidopsis thaliana	AT1G28050.1; AT2G33500.1; AT2G33500.2
Oryza sativa	LOC_Os08g42440.1; LOC_Os09g33550.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00643.21	zf-B_box	Domain	9	50	24.7	1.7e-05

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network