result

Gene information

Detail information of g176079

Location

Gene	Chr	Start	End	Strand
g176079	Scaffold_47669:HRSCAF_430755	273092	275621	-

Sequences

CDS

Protein

Gene

>g176079.t1
ATGTCTTCTTATATTAAGGCCATTCCAGTTCTCCAATTTTCACCACCACCACCTCCATCACCACCTCGGTTTCAACCTATTCCAAACCCCAATGAAGGCGGCACTGCATCAGAAAACCCATCATCTACTGTTACTTATTCATCTCCTCCACCGCCTTTCACCTCTACATATGAGCCTCCTCCTCCTCCAGCTACCAGTACTGTTACTCCTATTCTATTTTCTTCTCCTCCTCCACCATTACCACCACCACCACCACCACCATCACTACCATCTCCTCCACCGCCATTGCCATCAACACCACCACTAATACCATCTTCGTCATCACCGCCACCAGTAACTGAACCATCCTCTATTCCACCACAATTATCACCTACCCTTTCCCCACCTCATGTTCCAAAACCTCGTATTCCTCCGCCGCCGCCATTACATATAGGCAGACCAAGCTCGCACGTTAATAATTCAAGGATCAAACATAGTCCGCCGCCACCATCACATAGGAACAACAATGGGGCTATGACCGGCGCTTCAGCAAGCATAGCAGCACTAGCTGGCCTTATGATGCTTTCCTTTGTCGGAGCTGGTATATGGTTCGTCAGACAGAAGAAAAGGATACCCCCTCCACTTGTTCCAGGTACTCACTATTCTACTATTTCTACTCCTTCCCTTCATTTTTTTTCTAGAATATATACAAGTCATTTTAATTAACACTGTCTGTAATCAGATACAACCTATCAAAGGACGCTTTCATTTCCTACGACAACAAGGCAAAGTTCTGGTGGTTATAGATTTGCCTACTCAATAACTGACCCAGGCTTAAGCAGTTCAATATCTTTCTTCACCTACGAAGACTTATCGTACATGACAAATGGCTTTTCCTCTCAGAATCTGTTAGCTCAAGGTGGATTTGGTCCTGTATATAGAGGAATGTTACAGGATGGAAGAGAAGTTGCCATTAAGCAACTGAAAATAGGGGGAGCACAAGGGGATCGAGAATTTAGAGCAGAAGTTGATATTATCAGTAGAGTCCATCATCGCCATTTGGTTTCACTTGTTGGGTATTGTGTTCTGGAGCAAGAAAGATTGCTTGTCTATGATTATGTCCCCAATCAAACACTTTATCATCATCTTCATGGTATGCTTTCTTCCAGATTATCTGACATAACAGCCCATGTTATATGCACTTTCAGACTTATCCCAGTGTTGATTTCATCAGATTTACGCCTTTTACCAAGAGGGTAACTCTGATAAAATGGACACTGCGGGGTTAAATCTAACAAAACCTCAATTATCATGGGGGTTAAGTCCAAAAGAAAAGAAAAAACTATTATAGTTATATTTGTATCTTCAGATCAGTACAAAAATAAGCAATAACATTCAACACCTTTTTGCAACAATAGGACTAGGATCACCAATTATGGATTGGGCAACTAGAGTTAAGATTGCAGTTGGAGCGGCTCGTGGCATAGCTTACCTGCATGAAGACTGTAATGATTACCGCACTATTCCTGTTTTAAAAGTTGAATATGTTTTTATTTAATTGCAATGTAATTAGTAGCTAAAATATATGATCAGGTCATCCAAAGATCATCCATAGGGATATAAAATCATCAAACATTTTACTGGACAACAACTTTGAAGCTCAGGTTATTGTTTGTCTAACATAGTTATTCTTCAACTTGCTTCTCTGTTTGTTTTTAATCTAACTGGTGTACACTTAGTAGGTTTCTGACTTTGGACTTGCAAAGTTAGTTACTGATGCATCATCTACACATGTTAGTACCCGTGTCATGGGAACTTTCGGGTAGGTTTTCGAAAAAAAAGTTAGTTGTATATTATTTTGTAGTTGTTATTGTTACCATTTGAATATGTAACCAGATATAATTGTTGTTCAGTTATTTAGCTCCAGAGTATGCATTAACTGGGAAGTTGACTGCCAAGTCAGACGTCTATTCTTTTGGAGTCGTTCTTCTAGAGCTTATTACTGGACGAAAACCAGTCGATGTCTCCCAGCATATAGGCGATGAGAGTCTCGTAGAATGGGTGAGATGTTTTTATTATGAAATTGTTTGCATTAGTAAATAAGCATATTGCACTACTGTTACAACCTTTGATTTTGCTCAGGGCTTGTATAGTTTAGTTTAGCTAAAGTTGCTATCATGTTTCAGGCACGACCACTATTGAATCGAGCACTAGAAACAGGAGAAATAGGCGAACTAACAGATCCAAGGCTTGAAAAGAGATATAATTATAGGGAAATGTTTCAAATTATCGAAGCAGCAGCTGCATGCATTCGTCGTACAGCAACATTAAGACCGCGAATGGCACAGGTAAAGAAATCGCTTTGTCAAATTATTAAATAATCAGTTCCAAATTTGTGATATTATATGCAAATTCTCAGGTGGTGAGAGCTCTTGACAGCATGTCGGATTCAGATTTAACGAATGGTATTAGACCTGGAGTGAGTGGAGTAATCAACTCAGGGCCAAACACAGAAGAAATTGAAATTTTTAGAAGGTCGAGATTTTGCTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020105399.1	3.6e-147	proline-rich receptor-like protein kinase PERK8
Swissprot	Q9FFW5.1	2.8e-136	Proline-rich extensin-like receptor kinase 8
trEMBL	A0A6P5GB73	2.6e-147	proline-rich receptor-like protein kinase PERK8

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G38560.1	56.53	4e-144	508	AtPERK8;PERK8	Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g176079	AT5G38560.1	444	170	5	147	572	214	652	56.53	4e-144	508
g176079	AT1G26150.1	418	147	7	172	572	330	740	59.09	1e-139	493
g176079	AT1G68690.1	425	163	5	163	572	268	686	56.71	2e-139	493

Ortholog group

Species	Genes
Allium cepa	g176079.t1; g178142.t1; g263988.t1; g277207.t1; g311529.t1; g538913.t1; g7710.t1; g78171.t1
Allium fistulosum	AfisC2G01349; AfisC2G03622; AfisC5G01902; AfisC5G02319; AfisC6G03005; AfisC6G03843; AfisC6G06325; AfisC7G05902; AfisC8G00891
Allium sativum	Asa1G00263.1; Asa1G04108.1; Asa3G00436.1; Asa4G05761.1; Asa4G05967.1; Asa5G01338.1; Asa5G01339.1; Asa8G01009.1; Asa8G03865.1
Arabidopsis thaliana	AT1G52290.1; AT1G70450.1; AT3G24550.1; AT4G32710.1
Oryza sativa	LOC_Os01g02040.1; LOC_Os01g12720.1; LOC_Os01g53640.1; LOC_Os03g37120.1; LOC_Os03g56470.1; LOC_Os05g01040.1; LOC_Os05g01040.2; LOC_Os05g01040.3; LOC_Os05g12680.1; LOC_Os06g29080.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	264	533	149.4	1e-43

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0004888	F	transmembrane signaling receptor activity
GO:0007165	P	signal transduction
GO:0007178	P	transmembrane receptor protein serine/threonine kinase signaling pathway
GO:0005488	F	binding
GO:0005623	C	cell
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0007154	P	cell communication
GO:0007166	P	cell surface receptor signaling pathway
GO:0007167	P	enzyme linked receptor protein signaling pathway
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019899	F	enzyme binding
GO:0019199	F	transmembrane receptor protein kinase activity
GO:0019538	P	protein metabolic process
GO:0019900	F	kinase binding
GO:0019901	F	protein kinase binding
GO:0023052	P	signaling
GO:0036211	P	protein modification process
GO:0038023	F	signaling receptor activity
GO:0043170	P	macromolecule metabolic process
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051716	P	cellular response to stimulus
GO:0060089	F	molecular transducer activity
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K04733	IRAK4; interleukin-1 receptor-associated kinase 4	EC:2.7.11.1	MAPK signaling pathway	ko04010
			NF-kappa B signaling pathway	ko04064
			Toll-like receptor signaling pathway	ko04620
			Toll and Imd signaling pathway	ko04624
			NOD-like receptor signaling pathway	ko04621
			Neurotrophin signaling pathway	ko04722

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network