result

Gene information

Detail information of g176504

Location

Gene	Chr	Start	End	Strand
g176504	Scaffold_47709:HRSCAF_430795	303933	310380	-

Sequences

CDS

>g176504.t1
ATGCTATTCTTCTCTTCACCATCATCTTCGCCCAAAAAATTTACAAGGTTGAAGCGAGAGGACTACCATCGTACTCAGCATGATTCCGTTTTTTCAAGTTGGGAGATTTTGATTGGGGACTGTGACTGGGAGGATTATCATTTAGGCAAGGATGGAGCACAAAGATACAGGATACATAATCTTCCTAATGGCAGTTCTTGCCCTGGCCTTTATGAACTTGGGATTACTGTTGTTCCAAAAAGACACGATGGCCATAAATCACGTAAACATCGATCCAAAAACATCATTGTTGTTTATCTTGGACAAACAAATAATGTGAGAACAAGACTTCAAAAATATGGCCGTGTCGGAGCTCATTTGGATGCTGGGAAAGTAGCAGGCTCTGCTGCTAATGATGGTATCAATGAATGCCCTGGATTATTCAAGAAAGTATTCTCAAGAGGATACTCTATCATGTTCAGATGGGCCCCAATGATAGACAAGAAAAAAGCTGAGAAGACTGAAGCTGATCTGCTTAATGTTTTTGATTATGCATGGAACACGTGTGGAAATAGCTCATGTCGTAGCAATGAAATCTTCCAGAAGCTTGATTCTAAATCTAGTCGTAAAGCCATCAGCATCGTTAAAAAATTCCACTTCTTAAAGGATTCAGCCTTTAGTCGGAAAGCTGGAATTAAAATCGATGCAAGTGTACCTTCAAACATCACCAAGGCCAATAAAAGCTTCCTCCTTCCACACGTTTTGAAATTTAGGAAATCCCAACTTCAGTTTGTTAATAAAAAAGACACATACTGCAATAATAATGAAATATGTGGAGTGGCCATTGGTAACGGGTCTGTTTGTAAGAATATGCCTCGCCTTGGGAAGAAAAGGTGTGAAGAGCACAAGGGGAAAAAGATTGTTGGCATGGATTCTGTAGTAGTTATTGCATCCCAAACTCATCAAGAGAGTACAGTTTATAAGACACGGTGTGGCTTATTGCTGGAAGATGGTTGTTTTTGTGCTAATGTTCCAGCGTATGGAAGAAAAAGATGTGAGCTGCACAGAGGGATGAGAAATAAACTAGATATAATTCGAAATACACCTAAAGTTGAACCGGATCTTATTGATGAAAAGGAAACATCAGTTAAGAATTGTTCTTCAGTTCAATCACTTAAAGCAGATGACAAAGATGATAACTGGGAAGAGGAGCACGTTATATGTGGTGTAGTCGATGGTGATGGTACAAAATGTAGGAAGAATCCAGTTTCTGGTAGGAAACGATGTGAAGAACATAAGGGACGAAAAGTATTTAAAATGGCCCTTTCTAACTTGAGCATAAAAGTTTTGAAGAACACGGACGATTTAGTCGTTTGCAGTGCTTGCATGGAAGATGGTTCAACATGCATGGAAATTCCTGTTCGGGGAAGGAAAAGATGTGAACTACACAAAGGTAGAAAGGTTAAGTCAGGTAAACTTAACATATTTTAA

Protein

Gene

>g176504.t1
ATGCTATTCTTCTCTTCACCATCATCTTCGCCCAAAAAATTTACAAGGTTGAAGCGAGAGGACTACCATCGTACTCAGCATGATTCCGTTTTTTCAAGTTGGGAGGTTAGTTGATTCTTTTATTCATTCTTGAAATAAATTTTTTCAATTATTTCTGAAATGTTTTGTTTGGTTGAATTGGACTATTAATTAGGTATAATTGATCTTTATGTTCGGAACATAGTACTTATATGAGTACGGCTAATGCAGCTGGCACTTAATTTTACTAGAGTTGCAATCGGAACCACTGAATCGATCATTTCACTGTTACAAAAATTGGACGCTTTCAATAAGTACAGCGTTAGTATTCACATAAGAAGAACAAGAAGAAAGGAGAAGAGTCGAGTTTGAGACAAAACTCCATTCAAAAAGTACACTTTGAGTGCATAAGTAGTTCATGCATATAAATTTGGAGCTCAGAGATATTGAATGGAGCGTGTTTAACATTTTTCCTATTTAAGTTGATAAAAAACTATGTGATTACCTTTTCAACAAATTCATTGATTGTAAATATTTTGATTATGACAGTTTTGATCAACGAGAAACAGGCATTTATCTAGCATTGTAATTGTAGCATCTTCCAAAAATAATAATACAATGATACAATTACACAAAAAAATAACATAACCAAGAACCCTCCTTGCTGTAATCTTTTTGAATTAGGAAATCTGTAGGTGTCTTTAGCTCCTAACTAACCACTAAAAAATAAGGACCTTTGAGGCCTAACTGTTGATTAAATCTAAGGTCAACATAGCCTGACTATGCTGCATCGAAAAGAATTGTTTCAAACTATTTTTTTCCATCTGTTTTTTACCGATAAAAATATCATAATTGTACTTGTTTCATTAGCTATTTGCATTATTTTGAAATTAAATGATATGATCATTAATCAGAAGTTAGGTAATTTTTGTCACTATTATTTGCTAAAATGAAGAAATAAGGGGATTGTATTGAAAATTTAGCATAGGGGCACCCTAATACAACAAAATACGAAAGTGAAGACAACAATACCTTCGTTGCTCCTTAACACTCTTTTATGTACATTGATTATTAATGCCATGAGATTCGATACTAAGACCTCTAGATAGATAGTATGAGACAAACATTGTCGTAGAAAACATCTTGCCGCTCCATAAGACTTTGTTTCGCTTCTTTCTTTCTATCTTCTCAAATCATTTTGAACCACTGTTAAAAACACGAAAGCACCCAATTTAAAGATGCATACAAACATATCTAACAATGCAACGATATTAAACAATGAATTCAATAATATCACAACAAACATAAGGGTGACAAAATATTTAATAACATAACATTTCAGGCTAAGCATCCAGTAATAGAAAACTTTAATATAGTGTAATTTAATAAAATACTCAGTCAATGAAACCACTGGGTCATTTGGTAAAATCTCTAGGCCGTTGTTCTGAAAATTCCCAAGACACCAGAATAAGTGCTTTGTTTAAATTATCACTCTTGTTATCAAAAAATAAATAAAATAAAATAAATTAAAATACTTCAGTGAGTTGAAGTTTTCTATAACATGTCTATTTTACAACCCTAATGTATTATGCTTCATGGATTAATACGATACATGACAACAACTACCAAGCCATTATTCTCAAACAAGTTGAGCTCGGCTAGAGATGAAACCCAAAACTAAATGGCAAAATCAATTTAAAAGTAATAATAACAATAATAGTTTTAAAAACGATAATAAAAATATAAACAAAAAAGTAAAATAATTAAACAAATAATAATAATAAATAAATAAAAATAAAATAAAAATAGATAAAGAAATTAAAAAAACTATGATGATAGTAGTAGTAGTAGTAATAATAAAAATAGTAATAATGGTACTAATAGTAATACGGACCGAAGACCAAACACTACGTCTTAGGCTTCTATTCACTAGTCCTATAATCTAAAATTTATAACACTACCTTTAAATCAATCGTAAGTAAAAAAAACTTCTAGCTCATGGTCTTGATACATGGATCGCTAATTTTCACGCACTTTTGTCTGATACCAACTCTTCGGATATATTACAATCCTCTAAGTCCTTTCTTGCTATCTTTTTCCATGTTAACCTTAATCGACCTCTACCTCTCTTTAAGCATTCAATGCGGTCTATAATTCACGCGCACAGGTGCCTCTGGAGGCTGCCACTGATGTCCAAACCATCTTAAGCGGTGTTGGATCAGCTTTTCTTAAATTGATGATACTCCAAGTTTGTCACGTATGTCATCATTCCTAATTCAGTCTTGTCTTGTATGACCACAGTTCCATCGCAGCATATGCATCTGCTATATTTATCTTCTGGATATGTTGTCTTTTAGTAGCCTAACATTCTATATCATACAACATATCATGTCTGATTGCCGTGTTGTAGAACTTTTCTATAAGCTTTTGTGAGACTTTCCTATCATAGAGAATGTCAGGCAATAGTCACAATTTCATCCATCCCGCTCAAATTCTAAAACAAACATCTTTATCAATCTCATCATTATATTGTAAACCTAAATATCAAAGAATTCCTTCTTAGGCACTACTTGTCCGATCAGAGTGACGTCTTCATCCTCTTAACTGACATCGTTGAACTCGCACTTCATATACTATGTTTCATTCTCCTAAGCTTAAAACCATTTGATTCTAAAGTCTGCATCCACAACTCCAGTTGTTTATCAATCCCCGTCATACTTTTATCAATCAGCACAACATCATGAACAAAGAGCATATACCAAAGAATCTTACCTTGTACACCCTTCGTAACATCATCTATCACCAGGGCAAAAAGGTAGAGGCTTAAAGCTGACTCTTGATGTAATCCTATATTAATGGGAAAGTCGTTGGTTTTACGATCGCATGCTTTAACATTAGTCAAAGTATCATCGTACATATCCTTGATAAGAGTAATGTACTTTGTTGAGATTCTTTTCTTTTTCCGAGCCTACCACATAACCTTTCTCGGAACTTTGTTATAAGCTTTCTCCAATCGATAAATATAATATGTAGATCTTTCTTTTGCTTCTTAAATCTCTTCATAAGTTGTCTTATCATTAAAGTCGCATTTGTGGCCGACTTTCCAAGCATGAAATCTAATTGGTTTTTTGAAATGTTTGTCATAATTCTTAATCGATGTTCAACGACTCTCTTCCAAAGCTTCGTTGTATGACTCATAAGCTTAATTTCTATGTAGTTTGTACAACTTTGAATGTCTTCTTTATTCTTGAAGACTGTAACTAATATGCTTCTTCTCAACTCATCTGACATCTTGTTTGATTTGAAAATATTATTGAACAACTTAGTTAGCCAGGCTATCCATGCATCTCCAGGGCATTTCCGCACCTTAATGAGATGTCATCAGGATCCAACGTCTTACCTGCATTCATCCATTTTAACATCTCCTTTGCCTCGGTTTCTTGAATTCTCTGAATAAAATGTCTGTCAGTGTCATCAAAAGAGTCGTCCAGCTCGATCGTAGTGCTATCATCTTTTCATTGAATAACTTGTTGAAGTGAAACATCTGATTCAAGTTTCATAGTTTTTCATTGTACCCAATGTTTGCATGTTATCTCATGAGTTCACTTTTTCACTCACTGATTTTAAAAAAGATGTATAGTTAGACTTAAAAATTAGATTACGGATTAAGGAGAATTTTGAGAGCAATCGATTTGATTTTGGCGTAAGAGATATGAAGAAACAGAAGGTACTTGGGAAAAGTACATTTTTTATTAGAAATTGGCCCTCCTTAAGTAAATAAAGGTATTGCCTTAATAGTTAATAGGGCCAAAAATAAAGACTTTTGGATACCTAACTTGTAATTACGTCTAAGGTCACCATAGTCAGACTTCACTGCGTTAAAATGAATCCTTTTCTTCTTACTGATAAAAATATTATAGCACTACTTTTTCCATCAGCTATTTGCATTATTTTGAAATTAATGACATGGGTTATTAAGCAGAAATTAGCTAAGTTTTGTTCCTTCGGATTTTTGTCATGTTGTATAGCTATGCATCTCTGCGTCTGCACACACATTTTGTATCTTTAATGATACACAATTCCAAAAAGATGAAACAAAACGAACCTTGTAATTGTGTCATTGATATTTTTGATGTATTGTACAAGTTTATCCCTCACCGTATACCTGCAAAGCTCAGTATCATATTTACACAGTAGCAAGTATGATTTTCTTAGTGCAGTCATATGAATGCATGCGACATTACCTCATATTGATCATCTCAATTGAAATCTTTGTTATCGATAGCACTGTCCATTTCCTTTTATTTTTGAAACATGATACTTATTTGACCTCTTTTTTATATTGTTCTTTTAAGATTTTGATTGGGGACTGTGACTGGGAGGATTATCATTTAGGCAAGGATGGAGCACAAAGATACAGGATACATAATCTTCCTAATGGCAGTTCTTGCCCTGGCCTTTATGAACTTGGGATTACTGTTGTTCCAAAAAGACACGATGGCCATAAATCACGTAAACATCGATCCAAAAACATCATTGTTGTTTATCTTGGACAAACAAATAATGTGAGAACAAGACTTCAAAAATATGGCCGTGTCGGAGCTCATTTGGATGCTGGGAAAGTAGCAGGCTCTGCTGCTAATGATGGTATCAATGAATGCCCTGGATTATTCAAGAAAGTATTCTCAAGAGGATACTCTATCATGTTCAGATGGGCCCCAGTGAGTAGACAAATTCTGAACTGACACACTATGCTTTAATTAGAACAGCCATTTATATTTTTTACACCCAGTTTTAGAGGTGTTGATTTGACAAAAAATATATTACCTGTAACCGATTGCTTATGTATTAGCTGTTCAATGTTTCACCGAGAGCATTTGTTTCCTGTTCCAGCACATAAGAGGGTCATCAGTTATCACTTAACTGCTTTAACTGCACTACAACACGGAAAATGACTACTTTAATCATTACCTCCCACTGAATTTCAGTTAACCAATTAAAATAAGGGATCTGGGATCATATATTACCAAGCACAGTAAATTGTCTGAACTGTTGGTGCGGACTTGAATAGTTATTTAGTTGTATTCATTTGATTTGTGAAAGATAGACAACCTCATTTGTTTATTTTACTTAAATACATTGTATACTTATTTATATTAAGCTGGTTTTGTTTTTGATTCTCCTCATCGTATGCAATGCTCCAAATTCTTTCGTCACCTTAACTATTCTGATTCTTCAGTGTAACATCTGCTATTCAGTGTAGGTTTCAATTATAACTTCTTATATTACGTTGCTTATACTGGTACACACTTTGCATGTTCTTATTAGCAACTGTAATGTTTATTTTGAAGCGCTAGATACTTTCATTTTACTTTTGTCTTTGATTGGGTCGATGTGTGTTGAAGAAAGCTTTGTTGTTAAACGTGAACAGATGATAGACAAGAAAAAAGCTGAGAAGACTGAAGCTGATCTGCTTAATGTTTTTGATTATGCATGGAACACGTGTGGAAATAGCTCATGTCGTAGCAATGAAATCTTCCAGAAGCTTGATTCTAAATCTAGTCGTAAAGCCATCAGCATCGTTAAAAAATTCCACTTCTTAAAGGATTCAGCCTTTAGTCGGAAAGCTGGAATTAAAATCGATGCAAGTGTACCTTCAAACATCACCAAGGCCAATAAAAGCTTCCTCCTTCCACACGTTTTGAAATTTAGGAAATCCCAACTTCAGTTTGTTAATAAAAAAGACACATACTGCAATAATAATGAAATATGTGGAGTGGCCATTGGTAACGGGTCTGTTTGTAAGAATATGCCTCGCCTTGGGAAGAAAAGGTGTGAAGAGCACAAGGGGAAAAAGATTGTTGGCATGGATTCTGTAGTAGTTATTGCATCCCAAACTCATCAAGAGAGTACAGTTTATAAGACACGGTGTGGCTTATTGCTGGAAGATGGTTGTTTTTGTGCTAATGTTCCAGCGTATGGAAGAAAAAGATGTGAGCTGCACAGAGGGATGAGAAATAAACTAGATATAATTCGAAATACACCTAAAGTTGAACCGGATCTTATTGATGAAAAGGAAACATCAGTTAAGAATTGTTCTTCAGTTCAATCACTTAAAGCAGATGACAAAGATGATAACTGGGAAGAGGAGCACGTTATATGTGGTGTAGTCGATGGTGATGGTACAAAATGTAGGAAGAATCCAGTTTCTGGTAGGAAACGATGTGAAGAACATAAGGGACGAAAAGTATTTAAAATGGCCCTTTCTAACTTGAGCATAAAAGTTTTGAAGAACACGGACGATTTAGTCGTTTGCAGTGCTTGCATGGAAGATGGTTCAACATGCATGGAAATTCCTGTTCGGGGAAGGAAAAGATGTGAACTACACAAAGGTAGAAAGGTTAAGTCAGGTAAACTTAACATATTTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020274981.1	4.5e-114	protein EFFECTOR OF TRANSCRIPTION 2-like isoform X1
Swissprot	F4K933.1	1.7e-65	Protein EFFECTOR OF TRANSCRIPTION 2
trEMBL	A0A5P1ECW4	3.3e-114	Protein EFFECTOR OF TRANSCRIPTION 2-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G56780.1	35.27	6e-73	271	ATET2;ET2	effector of transcription2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g176504	AT5G56780.1	499	261	13	15	481	14	482	35.27	6e-73	271
g176504	AT5G56780.1	94	50	1	399	483	276	369	37.23	2e-10	63.9
g176504	AT5G56770.1	232	102	7	15	243	53	243	37.07	9e-31	131

Ortholog group

Species	Genes
Allium cepa	g176504.t1
Allium fistulosum	AfisC1G07239
Allium sativum	Asa7G05942.1; Asa7G05946.1
Arabidopsis thaliana	AT5G56770.1; AT5G56780.1
Oryza sativa	LOC_Os07g39800.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
-	-	-	-	-	-	-

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003690	F	double-stranded DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009888	P	tissue development
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0009890	P	negative regulation of biosynthetic process
GO:0009892	P	negative regulation of metabolic process
GO:0010087	P	phloem or xylem histogenesis
GO:0010089	P	xylem development
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010558	P	negative regulation of macromolecule biosynthetic process
GO:0010605	P	negative regulation of macromolecule metabolic process
GO:0010629	P	negative regulation of gene expression
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031324	P	negative regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031327	P	negative regulation of cellular biosynthetic process
GO:0032502	P	developmental process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0045934	P	negative regulation of nucleobase-containing compound metabolic process
GO:0048519	P	negative regulation of biological process
GO:0048523	P	negative regulation of cellular process
GO:0048580	P	regulation of post-embryonic development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051172	P	negative regulation of nitrogen compound metabolic process
GO:0051239	P	regulation of multicellular organismal process
GO:0051252	P	regulation of RNA metabolic process
GO:0051253	P	negative regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080050	P	regulation of seed development
GO:0080090	P	regulation of primary metabolic process
GO:0097100	F	supercoiled DNA binding
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1902679	P	negative regulation of RNA biosynthetic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1903507	P	negative regulation of nucleic acid-templated transcription
GO:2000026	P	regulation of multicellular organismal development
GO:2000033	P	regulation of seed dormancy process
GO:2000034	P	regulation of seed maturation
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2000113	P	negative regulation of cellular macromolecule biosynthetic process
GO:2000241	P	regulation of reproductive process
GO:2001141	P	regulation of RNA biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network