result

Gene information

Detail information of g176650

Location

Gene	Chr	Start	End	Strand
g176650	Scaffold_47735:HRSCAF_430821	81867	83962	+

Sequences

CDS

Protein

Gene

>g176650.t1
ATGGATGAAGAAGGAAATAATTCAGACAAGAAGATATGCGGCAGCGAAGAAGCTGAAGTGAGAAAAGGGCCATGGACTATGGAAGAAGACCTTATCCTTATGAATTACATAGCAAACCATGGGGAAGGGGTGTGGAATACGCTTGCCAAATCAGCTGGTATGTATATGTAGTAAGTGTATACAATATGTTCTTAGTTTTTTCATGAAGATTTTAGTTAGAACTATTTATCTTTTTGATTTTTATACGATGAATTATAAGGATTGAAGCGCACTGGAAAAAGCTGCCGCTTGAGGTGGCTGAATTACTTAAGGCCAGATGTCAGGAGAGGGAATATTACACCAGAAGAGCAGCTTCTTATAATGGATTTGCATTCTAGGTGGGGAAATAGGTAAGAACTCGTGCATATAATGAACTCTATTTATGGATATATGCATCATTCATGTGGCTATAGTTTGCTTTGTGTGGTTTGCTTAGGTGCTGTACATGATGATTTCTTACCTGTTGAAAATAATTTGCTAGTACACTCCCATTATCTCTTTAAAGCTTTACTTGACATAAATATCAGATGTTGACACTAAAAATAGTAAACTGAGAGAACACATTTTTGGATCAGAAGATTTTTATACGTCTCCTCTCTTAAATTCAGAGCATTCTGAGCAGCTGGAAGAATATTTGGATCTACCAGGGTTACTTAACTATGACTTTACATCATATTCATAACTGCAGAAAACAGAGCATTGTTATGTAAAGCCTACTATAAACCCAAATATGTCACAAAAGTGTAAACTATGTGCTATATTGCTTCTTCATTTTCTAGACCAATCTATATGGTTTACTAAGAGTATCCTTCACCGTTTGAATATTGGTATGTGATAATTATATTTCATGGCCAGGAAAAGATTATCATCATTAGACAAAATATAGATGATGAAAAATAGCTTAAAAAAAAAAAAATTGATCATCCTCTTCCTCCTTTTTTACTCGATGTTACTTGCTACTCTTTTTTTTGTTAAACGTCATAATACTGTCACTTCTCGCTTCTTAATTGTGTGGTTACTTAAGGTTTTAGTTTGATTAACTTAGCATATATGATAGTCAAGTTAAAAAAAGGCTTTACTTTCCATCATTATTCCTTTTTCTTTAATACTTGAGATCTACTGAATTTGATCATAAAAAAAGCTCTTATGTCATTCTAAAATTCCTTTGGAAGGATTTTCCTAGTACAAATTTGTTTTAGTTATTATCGTAGTACAAACATAGTATTACTAAATACTAAGGACAGGTGCAAGTGCATGTGCATGTTAACATCATAGAATAAAATATTGAGGTGAGTTGTATAATACCTTATAGCTTAACATATTAATATAGTAACCTATTTAATGACAATCGTTTTTGTTGTAATCTTACCAAGCATCGCTTTCATTTCTTAAAATGAAATGAAAAGATCTTATTGAGATAACCCATAGAGTTTTATAAGCACATGTTCTATAAGAAAAAAAAAAGACCATATTGGTATATTGGTGAAGTTTGTGTACTTTGATCATTTTTAACATTGGCATTCCTTTATGATATAACTTAAAACTTAAAAGCTCAGTTTTCTTTGAACTTTTAACCCCTTTTTTCTAGTTTTCAAGTAGTTGTTATTATTGTTATTACTACTACTACTTTACAAAGAGTAATACTTCATTCAATCAGAGTACTCTTTCTCGGTTTTCAAGTTTATCTGCTAATCTATTTATGATGTACGAGGTGGTCGAAAATTGCGAGGCAGCTACCCGGGAGGACGGACAACGAAATAAAAAATTATTGGAGGACCAGAATCCAAAAGAAACCAAAGCAAGGAGAGACCTTTGATTACATGCCAACTCAATTAATGGCAGATGATGCTAGCACGAGCAACCCTACATGCATGGACTTAGACTACAGTGGAGCAGCAGATCCTCAAAACTATCAAATGCAGCCTAATACTAGCCAAAGCAACAACACCGTCAATGCATTTGGTGCACCATCGTTCTCTACTCCTGATGCTAGTGAAAACTTCTGGACCGTTGATGATTTTTGGTCAATACAACCTCCTAACGGTGCAGGTGATTGA

Functional annotation

Database	accession number	e-value	annotation
nr	AGO33165.1	7.0e-80	MYB transcription factor
Swissprot	P81391.1	3.4e-63	Myb-related protein 305
trEMBL	D6MK84	2.9e-88	Transcription factor (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G40350.1	58.33	4e-60	227	AtMYB24;MYB24	myb domain protein 24

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g176650	AT5G40350.1	204	68	5	17	207	14	213	58.33	4e-60	227
g176650	AT3G27810.1	205	66	3	17	201	17	218	56.59	3e-59	224
g176650	AT3G01530.1	197	73	2	16	207	21	201	52.28	2e-55	211

Ortholog group

Species	Genes
Allium cepa	g176650.t1; g300053.t1; g7688.t1
Allium fistulosum	AfisC2G04868; AfisC3G04977; AfisC4G02407; AfisC5G01906
Allium sativum	Asa4G05755.1
Arabidopsis thaliana	AT3G01530.1; AT3G27810.1; AT5G40350.1
Oryza sativa	LOC_Os01g45090.1; LOC_Os05g49310.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	22	69	57.9	7.6e-16
PF00249.28	Myb_DNA-binding	Domain	75	118	54.4	9.2e-15

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0000988	F	transcription factor activity, protein binding
GO:0000989	F	transcription factor activity, transcription factor binding
GO:0001067	F	regulatory region nucleic acid binding
GO:0001076	F	transcription factor activity, RNA polymerase II transcription factor binding
GO:0001101	P	response to acid chemical
GO:0001134	F	transcription factor activity, transcription factor recruiting
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0007165	P	signal transduction
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0007154	P	cell communication
GO:0007275	P	multicellular organism development
GO:0008150	P	biological_process
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009739	P	response to gibberellin
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009753	P	response to jasmonic acid
GO:0009755	P	hormone-mediated signaling pathway
GO:0009791	P	post-embryonic development
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0009889	P	regulation of biosynthetic process
GO:0009908	P	flower development
GO:0009987	P	cellular process
GO:0010033	P	response to organic substance
GO:0010468	P	regulation of gene expression
GO:0010476	P	gibberellin mediated signaling pathway
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022414	P	reproductive process
GO:0023052	P	signaling
GO:0070887	P	cellular response to chemical stimulus
GO:0030154	P	cell differentiation
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0032870	P	cellular response to hormone stimulus
GO:0033993	P	response to lipid
GO:0042221	P	response to chemical
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043565	F	sequence-specific DNA binding
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048367	P	shoot system development
GO:0048437	P	floral organ development
GO:0048438	P	floral whorl development
GO:0048443	P	stamen development
GO:0048466	P	androecium development
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0048869	P	cellular developmental process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051716	P	cellular response to stimulus
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0071229	P	cellular response to acid chemical
GO:0071310	P	cellular response to organic substance
GO:0071370	P	cellular response to gibberellin stimulus
GO:0071395	P	cellular response to jasmonic acid stimulus
GO:0071396	P	cellular response to lipid
GO:0071495	P	cellular response to endogenous stimulus
GO:0080086	P	stamen filament development
GO:0080090	P	regulation of primary metabolic process
GO:0090567	P	reproductive shoot system development
GO:0097159	F	organic cyclic compound binding
GO:0099402	P	plant organ development
GO:1901363	F	heterocyclic compound binding
GO:1901700	P	response to oxygen-containing compound
GO:1901701	P	cellular response to oxygen-containing compound
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network