result

Gene information

Detail information of g178216

Location

Gene	Chr	Start	End	Strand
g178216	Scaffold_47934:HRSCAF_431020	292834	297560	-

Sequences

CDS

Protein

Gene

>g178216.t1
ATGGCGTTCTGGAATAACTCTCGTCTTCAAGACAATGGCGATTTCAATCTTGATTCTAGATATTCGCCTTCTTCTATGCTATTTCGAGATAATCCCACATCCTACAATCAATCTTTCCCTCCTATTTCTCAATCAAATTCGAGACCAATCTTGCCTTATTCAATCTGGAGTTCTGGATGCGATTCTAATTTCCGATCTTATGCCCAAATTGTTAAGGATAATTTACCGGTTAAGCCTTCTCAATCTCGTGGTCGTTTATGGGATCGCCAGCGAATCTGGTCTGATTTGAGGAATAGGAATAATTTTTGTTACAGATGTGGGGATAAAGATCACTTTGCATATCAATGTCGTGAACCCATTAGGTGTTTCGCCTGTGGCAATCTCGGGCACAAGAAAGATTCTTGCTTAATGAATTCTGAGATTGTAGATTCCGAATCCCAGATAAGTGCTGATCGGTATAAATTCCTATTGAAATCAGAACTCATAGCCTCTGGACCAATGCTTATTGATCATGGTTTTCAATTCACTTTAAAGTTCTTATTGCTTAAAGGATTGCTTCTTGACAATTTATGTCAGCAGAGATTTGAAGGATTGCAGCTATTAGAAGAATTATTTTCTCACTTTGATGTGATAAATTCACCTAATATAGGCAAGGGGTATATGGATAAATTTGGAGATCCAAATGACTACTTTGGTAAATCGTCCTTCAAGAGTCCTGTTGATTGTGAATTGATAATCGATAATCAGATAAAGGAAATAGATCCAACATTCTATGTCTGTTCTGTTAATGAGGATGAGGTGAACATTAATCAAGATCCTATGCTATTGGATGCCTCTGTGAAGCTTTGTTCATATGCACCTATGGCAAATAAAGAGACGAGTTCGTCTGATCCAATTATTCTTGTTAATGTCGAAGACCTTGATTTTACTCGTGTTTAGTGGTATGAGAGCAATTTCTCAGGATTTTGAGTTAGAAACAAGTAACAGATTTGATTGCTTGAATACTGTCATTGCTGATCAGGATTTTGAACTAGAATCTTTTGGTGTCATACCAGACAGTAATTCATTAGCATTCAAAGGATTATCGGCCGTAAGTTCGATTTGTTCAAAGTCTTCTGGAAACATTAACCTGTCTGATAAGAAGAAAAAAGGAGATATTGCTGTTAGTATTGATAAGAATTCCAATTTAGCTGGTGATGAAATGCAAAATTTCATTGACACGTCTGTTCAGGTTAGTAATTTGGTTCTTTCGTTTGGAAAGTATTCGTTAGCTGGAACATCTGATAATTTTGTTGAGGTTACTAAGTCTTATCATGGAGAGGTCTTCGATGAGGTTTTGTCTATTTCTTTGCCCGTTTTAATCGATGAGAAGTTAGTTTGTCCTATTTCAATTTCCGATAATTGGCTTAATGATATCAGTGCACACGATGTGCATGATATGCAGACTGTAGACAATATTGATGCTGCATCCTATTTGATTGATGAAGTTATAAACGATGTTACTCTCGATAATTCAGTTATTGATGATGTGAATAGATTGTTGTTTTTAGAGAACAGTTCCAGTTTAGATGAGGATGTTTCCGGTACTCAAGAGTTTGTTGTCCCTTATAAGTTGATTTGTTCAGACTTAAGGAGATTCGTTGCTGAAAAGGATAATATGGTTTTGAGTGAATTATCAGAGGTGGCGAATGATTTATCTTCTACAATTTTGTCTGTTGATTCCAGCTTTAATACTGCTGCTAGATCTTTTTCTGATAATAGTTATTTCAAGATTAAGACCAATAGTAAATTTAATTGTTTGGCAGAGGTTGACAAAGAGGACTTTGATTTTGGAATAGATCATTCCGAAGTTACAATGGGCAATGATTTCTCTGGTTGTAGAAATTGCAACAGATAAACAATCTGTTTATTCTATGAGCGCAGAAAGGATTAATCTGATGGAAGTGGTTTTAGATGATGGGCTAGCTAATAACTTTGTTAAGAATTTGAAATCTTGTGTTGATGATAAGCAATATAACTTGGATTCTTTTGATAATTCAAACGCTTTGGGTATTTTACTCTTGAAGGATGGTACTTCTGTAAATTCAGAAGAGGAAGCAATGTCACACCTGGTTAAGGATGTTAATGGTTTATTTTTAATGAACTCAGTAGTGAAATTGGGTAAGAAAATGGGGAATGATATAAGTAGGAACTTTGAAGGTTGTTTTGAGCCAGATTCTATTATTGTACAAAATGACACCAGTATATTAGTTACACATATTGTTGGTTCTAAGAGTTCTGAAATGATTAATCAGAGTAGTGAAACTATAGATGATGGTTCTGATCGAGCTATCTATTATTGGACAGGGGGTATTAGATTTGTCATGTATTGTTTTCTTGCGGCTCTTGGTAGATTTCCTCGTTCTCCTGCCCATGCTATTGAATTAATTCGCGAAACCAAATTAATGTGTGAAGCCAAATTAATGCGTGAAGCCAAATTAAGGAGAAGAAATTGTAAGAGCTATTCAGCTAGTAATATTAGGAGAAGTTCTCGTTTAAATCGTAGAGCTTAAACGAGGTATTTTGGTTTGTGTAGATGTTGTTTTTTATGTTGTTATTGCTTGGTTGTTGAGGTTGCGGATGCAGTTGTGGAAGTTTTTCTGTTGGCTGTTGCTTTCTCGGTGTCGCCCTTGATTGGATCTTCTGGTTGATGTTGTCTCTATAGGGTTGTTTCGTAGTTTTTTAGGTGCTTGGGTGGGTTTGTTTTCTCTTTTGTATGGGGGGTTCTATAGCTACCTGCCAGGCTTGTTGCCAGCTCCTTTATTTTTGTTAATATATATATGTACATGTGTGTGCTCTCCTCTCTCGTAGAGCACCACACATTTTTCTCAAAAAAATATCTCACATTTTTATCATAACTGCATACAAATGCTGCCTATATATAAAGAGTAGTTCGTCTTTTCAAATCAGTAGAATGCAAGAAGAAGTATAAATATCAATTTCCATGGACAGCAATAAGTTATTTCCTTAACGTTTCTAGAGATAATATGTTGTGTGCATTCATGTATCCTCAAGTTCCATTAACTTGATAACCTCTTCACAACTTTTTCCAATGTTTTACTGAAATTAAGCATTGATGTCGAAACACAAAATATGTGTACGAATTTGATTTGCTTTATGCCAAAGGAATAAATTTAATACCAGTCGTCGCTAGTTTCTCTTTTGTGCTGTCAACCACTGATTAATTAATTTCTTCAGTTTCATCAGAAGAAAAAAGAAACATATAAAATATTCCATTCAAACACTGCTTTAATTGTGTTTATGTCACCCTTGAATAATAAACGCAAACCACCACACTCTCCTCTTTACTAAAAACATCAGCACACGGGCATCAAACGTGCACCTGAAACCAAATGTGCGGCGTTCGGCGCAATATACATCACATTCTTAAATTAATCATGCACAACTCAATCAAAAAACCCAAAGACTGCTTTTTTTCCTAGTAAGATATGTTATCATAATCTAAACTGAACTTTCAAAATAAGTTGTATACAATAAATGCATGTCCCCTAATATCCCTACACTTGCAGTTCCATGTCTTCTTTTCACACATATATAACTAGCTAACATATCTGAAAATTTTAAGTATGGCGAACAATACATGTGGTTCAGGGAATCCATGCGGAGCATGCAAATTTCTACGTAGGAAGTGTGTACCAGACTGCATATTTGCACCTTACTTTGCATGTGATGAGGGCTCCGATAGGTTTGCTGCAATCCATAAAATATTTGGTGCTAGTAACGCATCGAAGCTGCTGCTGCATTTGCCGGTGCATGATCGTTGTGAGGCGGTGGTTACGGTTGCTTATGAGGCTCAGGCCAGGATTAGGGATCCTGTTTATGGCTGTGTTGGTCATATCTTTGCTCTCCAACAACAGGTATTTAGCTAACATATTCTAGAGAAGAAGTCAGAAATTACTATTGTAGGTCTACTAGGGTCCCTATTGGTTGCCGCTTAGTATTTACCACGATTTCTTCAAAAAGAATGATTTAAAGAGAAACTAAAGTTTTTTTTTCCTGAACGATAGTAATTGTGTTGCTAAAGATTTGAGTTCATTTTGCCTAAGATGGCCACGTTCAAAATATAGTTTGTGAAGGATTATGCTTGAATTTGATTATGTCTGGAATATAGCCTAGCTGAAGCTTATTGATTTGAATCATCTGCTTCCTAGCGGTCTAGAGGTTATTATGTTGATCTGGATACCATGATTAAATTTCACATTTAGTAGTTCCAATCTACGGACAATGTACAAACTGCGTAGATCAATTTTGTTTTGATCTAGCGGTCCAAATCAACAGATGAATTTTATTTTGATTTTGAACCGGAGAAGGCGATATGTATCATAACAGTGTATGCTTAATATCTAGGAGGACTATGTATATGTTATGTTTTAATTTAGGTAGCGAAATTGCAAGCACAATGCATGCAAGTGAAAGCTCATTTGGCTCATGGTATGTCTGGGCCTAGATCTTTTACCGAGGTGAATGACGCTGTAGTTCCTAACCATATGCAATCATTCCCAAATATGCAATATGATCATCATCATAACGTAAATTTTGAAGGGTTTTCGGATTATAGAATATGCAGAAGTAAAGATGAAGGTTCTTCTACGAAGAAGAGAGCTGTGCCACACAATTATGAGTTGGGGGAGCTTCAAGCTTTGGCATTTAAAATGATGAAGGATTAA

Functional annotation

Database	accession number	e-value	annotation
nr	KAE7997793.1	2.1e-51	hypothetical protein FH972_002396
Swissprot	Q9SLB7.1	2.1e-40	ASYMMETRIC LEAVES 2-like protein 18
trEMBL	A0A5N6QHW9	1.5e-51	LOB domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G42430.1	48.09	4e-49	193	ASL18;LBD16	lateral organ boundaries-domain 16

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g178216	AT2G42430.1	235	69	7	738	921	13	245	48.09	4e-49	193
g178216	AT2G45420.1	100	26	0	743	842	40	139	74.00	6e-42	169
g178216	AT3G58190.1	139	56	1	740	878	11	145	56.83	4e-40	163

Ortholog group

Species	Genes
Allium cepa	g178216.t1; g435132.t1; g449866.t1; g524431.t1; g92681.t1
Allium fistulosum
Allium sativum
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03195.11	DUF260	Family	740	838	122.7	5.7e-36

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0009653	P	anatomical structure morphogenesis
GO:0008150	P	biological_process
GO:0009791	P	post-embryonic development
GO:0009889	P	regulation of biosynthetic process
GO:0009891	P	positive regulation of biosynthetic process
GO:0009893	P	positive regulation of metabolic process
GO:0010015	P	root morphogenesis
GO:0010101	P	post-embryonic root morphogenesis
GO:0010102	P	lateral root morphogenesis
GO:0010311	P	lateral root formation
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010557	P	positive regulation of macromolecule biosynthetic process
GO:0010604	P	positive regulation of macromolecule metabolic process
GO:0010628	P	positive regulation of gene expression
GO:0048646	P	anatomical structure formation involved in morphogenesis
GO:0045935	P	positive regulation of nucleobase-containing compound metabolic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022622	P	root system development
GO:0031323	P	regulation of cellular metabolic process
GO:0031325	P	positive regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031328	P	positive regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048364	P	root development
GO:0048518	P	positive regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0048527	P	lateral root development
GO:0048528	P	post-embryonic root development
GO:0048731	P	system development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051173	P	positive regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051254	P	positive regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0099402	P	plant organ development
GO:1902680	P	positive regulation of RNA biosynthetic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1903508	P	positive regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0090696
GO:0090697
GO:0090698
GO:1905392
GO:1905393

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K13944	LBD16; LOB domain-containing protein 16	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network