result

Gene information

Detail information of g180060


Location
GeneChrStartEndStrand
g180060Scaffold_48161:HRSCAF_431247219508224464-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrONK63488.11.4e-34uncharacterized protein A4U43_C07F15670
SwissprotQ8RXS6.21.4e-34DNA helicase-related INO80 complex homolog 1
trEMBLA0A5P1EC991.0e-34Chromatin-remodeling ATPase INO80

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT3G57300.190.287e-38 152ATINO80;INO80INO80 ortholog

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
--

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00176.20SNF2_NFamily4810652.72.3e-14

Gene Ontology
AccessionOntologyName
GO:0005886Cplasma membrane
GO:0007059Pchromosome segregation
GO:0051276Pchromosome organization
GO:0000070Pmitotic sister chromatid segregation
GO:0007017Pmicrotubule-based process
GO:0005515Fprotein binding
GO:0000226Pmicrotubule cytoskeleton organization
GO:0000228Cnuclear chromosome
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000278Pmitotic cell cycle
GO:0000280Pnuclear division
GO:0000724Pdouble-strand break repair via homologous recombination
GO:0000725Precombinational repair
GO:0000785Cchromatin
GO:0000790Cnuclear chromatin
GO:0000819Psister chromatid segregation
GO:0008152Pmetabolic process
GO:0001558Pregulation of cell growth
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0051726Pregulation of cell cycle
GO:0042623FATPase activity, coupled
GO:0016020Cmembrane
GO:0003824Fcatalytic activity
GO:0007010Pcytoskeleton organization
GO:0017111Fnucleoside-triphosphatase activity
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005654Cnucleoplasm
GO:0005694Cchromosome
GO:0043231Cintracellular membrane-bounded organelle
GO:0005856Ccytoskeleton
GO:0006139Pnucleobase-containing compound metabolic process
GO:0016887FATPase activity
GO:0006259PDNA metabolic process
GO:0006275Pregulation of DNA replication
GO:0006281PDNA repair
GO:0006302Pdouble-strand break repair
GO:0006310PDNA recombination
GO:0006325Pchromatin organization
GO:0006338Pchromatin remodeling
GO:0006355Pregulation of transcription, DNA-templated
GO:0006357Pregulation of transcription from RNA polymerase II promoter
GO:0006464Pcellular protein modification process
GO:0006508Pproteolysis
GO:0006725Pcellular aromatic compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0006950Presponse to stress
GO:0006974Pcellular response to DNA damage stimulus
GO:0006996Porganelle organization
GO:0007049Pcell cycle
GO:0007051Pspindle organization
GO:0007346Pregulation of mitotic cell cycle
GO:0008092Fcytoskeletal protein binding
GO:0008094FDNA-dependent ATPase activity
GO:0008150Pbiological_process
GO:0009314Presponse to radiation
GO:0009411Presponse to UV
GO:0009416Presponse to light stimulus
GO:0009628Presponse to abiotic stimulus
GO:0009889Pregulation of biosynthetic process
GO:0009891Ppositive regulation of biosynthetic process
GO:0009893Ppositive regulation of metabolic process
GO:0009987Pcellular process
GO:0010212Presponse to ionizing radiation
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010557Ppositive regulation of macromolecule biosynthetic process
GO:0010564Pregulation of cell cycle process
GO:0010571Ppositive regulation of nuclear cell cycle DNA replication
GO:0010604Ppositive regulation of macromolecule metabolic process
GO:0010628Ppositive regulation of gene expression
GO:0022607Pcellular component assembly
GO:0015631Ftubulin binding
GO:0016043Pcellular component organization
GO:0045935Ppositive regulation of nucleobase-containing compound metabolic process
GO:0016462Fpyrophosphatase activity
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0016579Pprotein deubiquitination
GO:0016604Cnuclear body
GO:0016787Fhydrolase activity
GO:0016817Fhydrolase activity, acting on acid anhydrides
GO:0016818Fhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0019538Pprotein metabolic process
GO:0022402Pcell cycle process
GO:0033554Pcellular response to stress
GO:0030307Ppositive regulation of cell growth
GO:0031011CIno80 complex
GO:0031323Pregulation of cellular metabolic process
GO:0031325Ppositive regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031328Ppositive regulation of cellular biosynthetic process
GO:0031974Cmembrane-enclosed lumen
GO:0031981Cnuclear lumen
GO:0032991Cmacromolecular complex
GO:0033202CDNA helicase complex
GO:0033262Pregulation of nuclear cell cycle DNA replication
GO:0034641Pcellular nitrogen compound metabolic process
GO:0034644Pcellular response to UV
GO:0036211Pprotein modification process
GO:0040008Pregulation of growth
GO:0043014Falpha-tubulin binding
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043228Cnon-membrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043232Cintracellular non-membrane-bounded organelle
GO:0043233Corganelle lumen
GO:0043412Pmacromolecule modification
GO:0044085Pcellular component biogenesis
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044267Pcellular protein metabolic process
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044427Cchromosomal part
GO:0044428Cnuclear part
GO:0044446Cintracellular organelle part
GO:0044451Cnucleoplasm part
GO:0044454Cnuclear chromosome part
GO:0044464Ccell part
GO:0045111Cintermediate filament cytoskeleton
GO:0045740Ppositive regulation of DNA replication
GO:0045787Ppositive regulation of cell cycle
GO:0045927Ppositive regulation of growth
GO:0045944Ppositive regulation of transcription from RNA polymerase II promoter
GO:0046483Pheterocycle metabolic process
GO:0048285Porganelle fission
GO:0048518Ppositive regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051052Pregulation of DNA metabolic process
GO:0051054Ppositive regulation of DNA metabolic process
GO:0051128Pregulation of cellular component organization
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051173Ppositive regulation of nitrogen compound metabolic process
GO:0051225Pspindle assembly
GO:0051252Pregulation of RNA metabolic process
GO:0051254Ppositive regulation of RNA metabolic process
GO:0051716Pcellular response to stimulus
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0070013Cintracellular organelle lumen
GO:0070603CSWI/SNF superfamily-type complex
GO:0070646Pprotein modification by small protein removal
GO:0070647Pprotein modification by small protein conjugation or removal
GO:0070914PUV-damage excision repair
GO:0070925Porganelle assembly
GO:0071214Pcellular response to abiotic stimulus
GO:0071478Pcellular response to radiation
GO:0071479Pcellular response to ionizing radiation
GO:0071482Pcellular response to light stimulus
GO:0071704Porganic substance metabolic process
GO:0071840Pcellular component organization or biogenesis
GO:0071944Ccell periphery
GO:0080090Pregulation of primary metabolic process
GO:0090068Ppositive regulation of cell cycle process
GO:0090304Pnucleic acid metabolic process
GO:0090329Pregulation of DNA-dependent DNA replication
GO:0097159Forganic cyclic compound binding
GO:0097346CINO80-type complex
GO:0098813Pnuclear chromosome segregation
GO:1901360Porganic cyclic compound metabolic process
GO:1901363Fheterocyclic compound binding
GO:1901564Porganonitrogen compound metabolic process
GO:1901987Pregulation of cell cycle phase transition
GO:1901990Pregulation of mitotic cell cycle phase transition
GO:1902494Ccatalytic complex
GO:1902680Ppositive regulation of RNA biosynthetic process
GO:1902806Pregulation of cell cycle G1/S phase transition
GO:1903047Pmitotic cell cycle process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903508Ppositive regulation of nucleic acid-templated transcription
GO:1904949CATPase complex
GO:2000045Pregulation of G1/S transition of mitotic cell cycle
GO:2000105Ppositive regulation of DNA-dependent DNA replication
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0104004
GO:0140014

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K11665INO80, INOC1; DNA helicase INO80EC:3.6.4.12 --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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