result

Gene information

Detail information of g180458


Location
GeneChrStartEndStrand
g180458Scaffold_48218:HRSCAF_43130485801103233+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020240987.12.2e-231histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like
SwissprotQ9FF80.13.4e-144Suppressor of variegation 3-9 homolog protein 1
trEMBLA0A5P1FN481.1e-227Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT1G73100.144.173e-145 512SDG19;SUVH3SU(VAR)3-9 homolog 3

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag180458.t1; g356198.t1; g409580.t1; g433469.t1; g442815.t1
Allium fistulosumAfisC1G08965; AfisC2G04297; AfisC2G07479; AfisC4G06953; AfisC5G02664; AfisC5G02675
Allium sativumAsa4G03709.1; Asa4G04463.1; Asa5G05814.1; Asa6G01947.1; Asa7G07174.1
Arabidopsis thalianaAT1G73100.1; AT5G04940.1; AT5G04940.2
Oryza sativaLOC_Os01g59620.1; LOC_Os05g41172.1; LOC_Os05g41172.2; LOC_Os11g03700.1; LOC_Os11g38900.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF02182.14SAD_SRADomain257403142.38.2e-42
PF05033.13Pre-SETFamily43253058.29.3e-16
PF00856.25SETFamily54968373.62.1e-20

Gene Ontology
AccessionOntologyName
GO:0051276Pchromosome organization
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000775Cchromosome, centromeric region
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0003824Fcatalytic activity
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005694Cchromosome
GO:0043231Cintracellular membrane-bounded organelle
GO:0016570Phistone modification
GO:0006325Pchromatin organization
GO:0006464Pcellular protein modification process
GO:0006479Pprotein methylation
GO:0006807Pnitrogen compound metabolic process
GO:0006996Porganelle organization
GO:0007275Pmulticellular organism development
GO:0008150Pbiological_process
GO:0008168Fmethyltransferase activity
GO:0008213Pprotein alkylation
GO:0008276Fprotein methyltransferase activity
GO:0008361Pregulation of cell size
GO:0009987Pcellular process
GO:0010468Pregulation of gene expression
GO:0016043Pcellular component organization
GO:0016569Pcovalent chromatin modification
GO:0016571Phistone methylation
GO:0016740Ftransferase activity
GO:0016741Ftransferase activity, transferring one-carbon groups
GO:0019222Pregulation of metabolic process
GO:0019538Pprotein metabolic process
GO:0032259Pmethylation
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0032535Pregulation of cellular component size
GO:0036211Pprotein modification process
GO:0040029Pregulation of gene expression, epigenetic
GO:0042054Fhistone methyltransferase activity
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043228Cnon-membrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043232Cintracellular non-membrane-bounded organelle
GO:0043412Pmacromolecule modification
GO:0043414Pmacromolecule methylation
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044267Pcellular protein metabolic process
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044427Cchromosomal part
GO:0044446Cintracellular organelle part
GO:0044464Ccell part
GO:0048366Pleaf development
GO:0048367Pshoot system development
GO:0048731Psystem development
GO:0048827Pphyllome development
GO:0048856Panatomical structure development
GO:0050789Pregulation of biological process
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0065008Pregulation of biological quality
GO:0071704Porganic substance metabolic process
GO:0071840Pcellular component organization or biogenesis
GO:0090066Pregulation of anatomical structure size
GO:0098687Cchromosomal region
GO:0099402Pplant organ development
GO:1901564Porganonitrogen compound metabolic process
GO:0140096

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K00306PIPOX; sarcosine oxidase / L-pipecolate oxidaseEC:1.5.3.1 1.5.3.7 Glycine, serine and threonine metabolismko00260
Lysine degradationko00310
Peroxisomeko04146
K11420EHMT; [histone H3]-lysine9 N-trimethyltransferase EHMTEC:2.1.1.355 Lysine degradationko00310
Longevity regulating pathwayko04211

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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