Detail information of g180717


Location
GeneChrStartEndStrand
g180717Scaffold_48262:HRSCAF_431348220845234779-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020247322.10.0e+00protein CHROMATIN REMODELING 24
SwissprotQ8W103.13.6e-251DNA excision repair protein CHR24
trEMBLA0A5P1E0Y90.0e+00Protein CHROMATIN REMODELING 24

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT5G63950.162.710.0 912CHR24chromatin remodeling 24

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag180717.t1
Allium fistulosumAfisC5G00879
Allium sativumAsa6G06328.1; Asa6G06329.1; Asa6G06331.1; Asa6G06348.1
Arabidopsis thalianaAT5G63950.1
Oryza sativaLOC_Os04g59620.1; LOC_Os04g59624.1; LOC_Os04g59624.2; LOC_Os04g59624.3

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00176.20SNF2_NFamily327621158.71.4e-46
PF00271.28Helicase_CFamily67678463.91.4e-17

Gene Ontology
AccessionOntologyName
GO:0000018Pregulation of DNA recombination
GO:0000019Pregulation of mitotic recombination
GO:0008150Pbiological_process
GO:0010038Presponse to metal ion
GO:0009893Ppositive regulation of metabolic process
GO:0010035Presponse to inorganic substance
GO:0010604Ppositive regulation of macromolecule metabolic process
GO:0045935Ppositive regulation of nucleobase-containing compound metabolic process
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0046686Presponse to cadmium ion
GO:0031323Pregulation of cellular metabolic process
GO:0031325Ppositive regulation of cellular metabolic process
GO:0042221Presponse to chemical
GO:0045951Ppositive regulation of mitotic recombination
GO:0045911Ppositive regulation of DNA recombination
GO:0048518Ppositive regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051052Pregulation of DNA metabolic process
GO:0051054Ppositive regulation of DNA metabolic process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051173Ppositive regulation of nitrogen compound metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0080090Pregulation of primary metabolic process

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K20093ERCC6L, PICH; DNA excision repair protein ERCC-6-likeEC:3.6.4.12 --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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