result

Gene information

Detail information of g181226

Location

Gene	Chr	Start	End	Strand
g181226	Scaffold_48329:HRSCAF_431415	537105	538661	+

Sequences

CDS

>g181226.t1
ATGGAGACAAAGTTGTGTTTAAATAGCAGCAGCAGCCGTAGAGGTGATGAAGTTGTACCTGAACAAGATGTAAACCATATCATTGGAAGAATGAACAATCCTGCAGAGCATGTGGTAGACACCGAGTTATGGCACGCTTGCTCGGGAAAGACAGTGAAAATACCAGCAATCAACTCTATAGTGTACTACTTTCCTGAAGGTCATGCAGAACACGCGCAATATCCTCTTGATAATCTTCTTCAGACGATGAATACACCTCCTCCTCCTCTTGTGCTTTGCCGTGTAGTTTCTCAAAAGCTCATGGCCGACCCAGAAAGCGATGAGGTTTTTGTCAAAATTGGCCTCGTCCCCATGAAACGAAATCCTGAATTTGATCGTTCAACAGAAGAAGAAAACATGAAGGATGATTATTCAATGAAGGAGGAAGTAGTCAAAAAGCCGATGACGTTCACAAAGACTTTGACTCCGTCTGATGCAGACAACTCAAGCAGCTTTACAGTGCCTAGGCAATGTGCAGCCACAATACTTCCAGAGCTCAATTACAAAGAAAAGCCACCGGTTCAGCTCATATGTTGCAGGGATGTGCATGGAAATAAATGGAGTTTTAGACATGTGTTCAGGGGGTCGCCTGAGCGTCATTTATTAAATGGAGGATGGAGCAGATTCGTGGATAGTAAGAAGCTTGTGGCAGGGGATGTTATTGTATTTTTGAAGAAAGAGAGCGGGGAGGTTCATGTGGGTATAAGGAGGTCGATGAAGGAAGGGGCCAAGCTTAAGAGTGGAACAAGGATAAGGAAGGAGGCGGTGATAGAAAGCATAAGGAAGGCATGTGGAGGAGAGGCATTTGAAATAGAGTACTATCCAAGGGCTGCAGGCAGCACGCCCGAATACTGGGTGAAGGCATCATTGGTGAGAGAGGCAACAATGATAGCATGGTACCCTGGAATGAGGTTCAAAATGGCTGTTGAGTCGGAGGATCAGTCAAGGGTTAAATGGTTCATGGGAACAGTAGTACAAGTAAAGAACCAATGGTGGAAAAAGTCACTATGGAGACAGCTTGAGGTGACATGGGATAAAGGAACAGGAAGCAGACAGCTTGAAGATGTGAAGCGAGTCAACATGTGGATGGTCGAACCTGTTTCAACCATATTGCCCATGCTGCCTGATCCTGATCGTCTGCTTCTCTCTCCTCCGGCTAAAAAGATTTGCTTGCCTCCTTATGATTTTTTATCCAATTCTGTATGTCCTCCTTTGAATACCTCTACTACTGGGCACCTATTTCGGGTGCCTCTACCACAACAACTTCCTCATTGCTCTCTAGGCATACAGGGATCCAGGCATAATGATCATCACTCTCCAAATTTTCATTTTAAGGATGATGATGCTGGTAAGAATGATGTAGCCTGTGTTCTAACTCTTGGCCAATATGCTCATGCACCTGCAGCTTCTCCTCCTCCTACTGTTGCTGCTGCTTCTGCTGCTGCAAACATGGAATCCACATCTACACCTGCTACGTTTAGGCTATTTGGCAAGACAATATATGGTCGTCAAGACTGA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020259738.1	4.0e-92	auxin response factor 18-like isoform X2
Swissprot	Q6K223.1	1.2e-88	Auxin response factor 8
trEMBL	A0A5P1EYY5	2.8e-92	Auxin response factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G30080.1	42.55	2e-94	343	ARF16	auxin response factor 16

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g181226	AT4G30080.1	470	208	11	26	451	3	454	42.55	2e-94	343
g181226	AT2G28350.1	535	210	19	36	477	4	515	39.07	2e-87	320
g181226	AT1G77850.1	457	228	14	39	454	16	453	36.98	4e-74	275

Ortholog group

Species	Genes
Allium cepa	g181190.t1; g181226.t1; g181239.t1; g181244.t1; g181247.t1; g208584.t1; g403994.t1
Allium fistulosum	AfisC6G04104
Allium sativum	Asa8G02969.1; Asa8G02990.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02362.18	B3	Family	150	251	73.4	9.7e-21
PF06507.10	Auxin_resp	Family	279	353	62.4	3.1e-17

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003723	F	RNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0007389	P	pattern specification process
GO:0008150	P	biological_process
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009733	P	response to auxin
GO:0009889	P	regulation of biosynthetic process
GO:0009987	P	cellular process
GO:0010033	P	response to organic substance
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022622	P	root system development
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0035198	F	miRNA binding
GO:0042221	P	response to chemical
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048364	P	root development
GO:0048731	P	system development
GO:0048829	P	root cap development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051301	P	cell division
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:0099402	P	plant organ development
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0061980
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network