result

Gene information

Detail information of g182676

Location

Gene	Chr	Start	End	Strand
g182676	CHR6	182477805	182481809	+

Sequences

CDS

>g182676.t1
ATGGATTGCATGACCGAGTTTCCTCACAATCACTTGGATCGAAGGCCGAGGAAGCGAGCGCGATTGGGTTGGGATGTTGTTTCTCAAAATTCCAAGGCTCAAATAGGAATATTATGTGGGCAAGAAGTTGGAGATGTAACCAGATTGGCAGCACCTCCTTCAGACTTATATTCATCTATATATTCGAATGGACTTCCTAGAAATGCATCACCTCCTTGGAGAGAAGATGATAAAGATGGACATTACATGTTTGGAATTGGCGATAATTTAACACCTCGCTATCGAATTCACAGCAAAATGGGTGAAGGTACTTTTGGACAGGTATTGGAATGCTGGGATAGGGAGAGAAAGGAAATGGTGGCAATTAAAATTGTCCGAGGCATTAAGAAATATAGAGATGCTGCCATGATCGAAATTGAAGTGCTTCAACAGCTTGGGAAACATGATAAAAATGGCAGCCGTTGTGTACAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATTGTTTTTGAGAAGCTTGGCCCAAGCTTATATGATTTTCTACGCAAAAACTGTTACCGCTCATTTCCCATTGATCTTGTTCGTGAGATTGCAAGACAACTTTTGGAATGTATAGCATTTATGCATGATTTACGCCTCATTCATACTGATTTGAAGCCTGAGAATATACTTCTTACTTCTTCAGAGTTTATAGAAATACCTGATTACAAGGGTTCATCTCGGTCTTTTAAAGATGCTTCATTCAAGAGGCTACCGAAATCAAGTGCAATTAAGGTTATTGATTTCGGTAGCTCCACCTATGGCAATAAAGACCATAACTACATTGTCTCCACCAGGCACTACCGTGCACCTGAGGTCATATTAGGTCTTGGATGGAGTTATCCCTGTGACATTTGGAGCATTGGATGTATTCTTGTGGAGCTCTGTTCGGGAGAAGCTTTATTTCAGACTCATGAAAACTTGGAGCACTTGGCGATGATGGAAAGGGTATTAGGTCCACTTCCTCATCACATCCTCAAAAGAGCCGATCGACATGCTGACAAATATGTGAGGAGAGGCCGCTTGAATTGGCCTGAGGGTGCAGTATCACGTGAGAGTATGAAGGCTGTTCAAAAGTTACCACGTCTTCAGAATTTGGTGATGCAGCATGTAGACCACTCAGCAGGAGATCTGATAGATTTGTTACAAGGTCTATTGAAATATGATCCTGCAAATAGAATGGAAGCGCATGAAGCTCTCAGACATCCTTTCTTTACTAGAATGCATAGAAGATATTGA

Protein

Gene

>g182676.t1
ATGGATTGCATGACCGAGTTTCCTCACAATCACTTGGATCGAAGGCCGAGGAAGCGAGCGCGATTGGGTTGGGATGTTGTTTCTCAAAATTCCAAGGTATTTCAATATTTTCGATTATTTTATCCTTGATTAGTTAGGGTTATGCTTAGATCCGCTGACGTTGATATGGCGTGGTTCTGTGTAGATCTGGAAGTTCTCTTTTGTTTAGCTGCATCAAAATATTAAATTTATGTATTTAGATTGGGTTTTTTCATATTATGTAATTATTCATGCCATAGTATAGTATAAATTTATGGATTTGGAAGATGAAAAATTCGTCCATTTCCTCAGTAGTGTTATGTGAATGAATTTTGCTTCCATCAGAAATGAGGTTTATATCAACCTGGTTGCTAGAATATATCTGTTTTGGCATGTTACTACACTGCAAAAATGAAAACTTAAGTTTTTCTTTAGATCCAATTCATTTAACTATAAATTAAATTCTATTAATCAATATAATACCGTAAATTCAATATCTGATTAAACCGTGGGGAACTTGGAGGTAGTGATTTGATCGGGACAAACCAACTTAATTATTGATTGATGTATGGCTTAGTAATGTAGGATAAAGTCAACAAAAACTAGTGCACTTTTTAATATTTTACATGAACTACTATATTTTGATTGTTAGTGCCTAGGTTGTTTTTCAAATCTATATCAGTTCTCCAATTGCTAATAGCCATGTGGATTATTAAGGGATTGTAGTTATTTCTTTTAACCATGACTTGAGGAATTGCAACTGTTAATTCAACTGTGACTAGGGAATCAATTGATAATTTTTATTTTAAGTGGAAAAAAGTATAAACAAATGGTTGTGTGTAGGCTCAAATAGGAATATTATGTGGGCAAGAAGTTGGAGATGTAACCAGATTGGCAGCACCTCCTTCAGACTTATATTCATCTATATATTCGAATGGACTTCCTAGAAATGCATCACCTCCTTGGAGAGAAGATGATAAAGATGGACATTACATGTTTGGAATTGGCGATAATTTAACACCTCGCTGTAATTATACTTAATGTGCCCTTCTTTTTAATTGTGTTGCGTCACAATGGATAAACTGTTGTCAAAATATAAATATAAAAATAAAAATTTTAAAAATGTTTTAAATACATTCATGCTGGGTTCTGACTATTTGGTTTCTTGTGCATTTACAGATCGAATTCACAGCAAAATGGGTGAAGGTAAGCTGTGTTTTTGGTTATTGAGGTAGCACTATACATTTGTAATTGCCATGCCTGCCTTGCATGTTTCTATGGAATTTTTGTTTAGCTTATTCTTTTTTCTAATATGGTTTACACTTGTGTTGTCTTTATTGTAACAGGTACTTTTGGACAGGTATTGGAATGCTGGGATAGGGAGAGAAAGGAAATGGTGGCAATTAAAATTGTCCGAGGCATTAAGAAATATAGAGATGCTGCCATGATCGAAATTGAAGTGCTTCAACAGCTTGGGAAACATGATAAAAATGGCAGCCGGTGAGTGATTTATGTGCAATTATTTTTCTTGTGCTTTTTGCTCTTTTTTGCTCTGTATTATTATAGGTTTGAGGCTATATGTATAAGCTGATGTATTTTTGCAGTTGTGTACAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATTGTAAGTTTAAGATTATAATAAAATGAATTTATGATCATTTCCCACCTAGTACGGGCGGTTAAATGTAAAATTCAAATGATTTTAACAGGTTTTTGAGAAGCTTGGCCCAAGCTTATATGATTTTCTACGCAAAAACTGTTACCGCTCATTTCCCATTGATCTTGTTCGTGAGATTGCAAGACAACTTTTGGAATGTATAGCATGTGTGTAAACAGTACTTCATCCGGTTGCATATTTTTAGTTGTTATTATTACCTTTTCATCTATATTTATATATGACGAAAGATAAAATCAGTTTTTTCTTCTTCCATGTTTCTGAGAATTTACCATAGCGTAAGCTCCAGCATAATTACTGTACATTGATTGGTATTATGATTAAAAATAATAATCATTTGCTTAAGTTTATTTGTTTTGCAATTTACCTGCTTGCAGTTATGCATGATTTACGCCTCATTCATACTGATTTGAAGCCTGAGAATATACTTCTTACTTCTTCAGAGTTTATAGAAATACCTGATTACAAGGTATAATTTAAATATCCGATTGATGAATTCAATCAATAAGTGTGTACGTAGCTTATAAGTCCATGCTCAAATTACATTTTCTTTTAAAATTCTGAAATGCTATGCATTTTAATCCACCCGTTGTGTTTTTTTGCTGTTTTAATATCATTGTATACACTGTTCATTGTGTTTGTCTGCATATCATGCTCTCTAAAAAACACATGTTCGTTTGTATGCAATAGGGTTCATCTCGGTCTTTTAAAGATGCTTCATTCAAGAGGCTACCGAAATCAAGTGCAATTAAGGTTATTGATTTCGGTAGCTCCACCTATGGCAATAAAGACCATAACTACATTGTCTCCACCAGGCACTACCGTGCACCTGAGGTCATATTAGGTACATTAATTTTGATTATACTTGTATATAAGTATGCATTCTACTCAGGATAGCTAAGTATATATGAGATGGATTTAGGTCTTGGATGGAGTTATCCCTGTGACATTTGGAGCATTGGATGTATTCTTGTGGAGCTCTGTTCGGTATATAATCTGTATATTAGCTTTGTTGACCTTTTATAATAAATTGATTACCTGAATTAATCATTTTAACGAGTATTTTCAGGGAGAAGCTTTATTTCAGACTCATGAAAACTTGGAGCACTTGGCGATGATGGAAAGGGTATTAGGTCCACTTCCTCATCACATCCTCAAAAGAGCCGAGTAAGTGCATATATGTATATGGACTGGTTACACCCCTTAAGCTACACCTTTATATTTTTTGGGTTGTGTAATTTGATTTTTGAAATAATATCAAATTTTGTATATATGTTCTTATATCATTCAAGATCATCTCTACAAAAGTGGAGATCATTTGGATAATCCTAATGTTCAAAAATAATATTTTGAATTGATGATCAAATTGAACGGCTAATGTTTGCTTTAGCATTTTGATATGGCTTCATTTTTTGTTAAGTGAAGATGTTGAACGGTACAAAAACATATGTACAAAGTTTGGCTTCATTCAAATTGTATAACTTTAACAATCATTGAGATGTATCGAAAAGGGTTGTAGTTAAAGGGGATGTAGTGTAAGGGGTGTAACCAAACTTTGTAAATATATAATGTGATGTAAATTCATGTTTGTTTCTCTGTTGTTGGTTTCTTATATTTCTTTTTTTTCCCCCATGGAAGTCGACATGCTGACAAATATGTGAGGAGAGGCCGCTTGAATTGGCCTGAGGGTGCAGTATCACGTGAGAGTATGAAGGCTGTTCAAAAGTTACCACGTCTTCAGGTATTCCATGACCTTACACAAATATTGATTATTTTTAACAACCAACTTTTAATCTTGAAGCGAAGTGAAATGATTTGGCTTTTGCATGCTAACCCTTTTAACTTGACTAATATATATGGAGAGGAATCAAAACCCACGACCTTTCTCGCTTTCTATCAATATTTGGTAATCATATGAAGGCTCTTTTGGACGGACTAATTTTGTTCACATTTTTGTTTGTGCGGACAAAATATATTCTGACTGGGTAATAAACCCGGAAAGATTAGTCCTACTTGCATAAATCATTATTTCAATAGATTGATGAATAGAAAACATTACCCGTGATATACTTGTAGCGACTGGGTTATACATATATTTGTGGTGCTATTCTTAAGAGCAACTTTATGTTGCAGAATTTGGTGATGCAGCATGTAGACCACTCAGCAGGAGATCTGATAGATTTGTTACAAGGTCTATTGAAATATGATCCTGCAAATAGAATGGAAGCGCATGAAGCTCTCAGACATCCTTTCTTTACTAGAATGCATAGAAGATATTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020245738.1	1.1e-228	serine/threonine-protein kinase AFC2 isoform X1
Swissprot	P51567.1	1.1e-201	Serine/threonine-protein kinase AFC2
trEMBL	A0A5P1E6X6	7.8e-229	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G24740.1	76.18	0.0	703	AFC2;AME1;FC2	FUS3-complementing gene 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	bit score
g182676	AT4G24740.1	424	98	2	1	422	3	425	76.18	703
g182676	AT3G53570.4	423	112	3	5	422	23	445	72.34	634
g182676	AT3G53570.2	423	112	3	5	422	23	445	72.34	634

Ortholog group

Species	Genes
Allium cepa	g182676.t1; g85527.t1
Allium fistulosum	AfisC3G02620; AfisC6G02316
Allium sativum	Asa2G02104.1; Asa8G04401.1
Arabidopsis thaliana	AT3G53570.1; AT3G53570.2; AT3G53570.3; AT3G53570.4; AT4G24740.1
Oryza sativa	LOC_Os01g62080.1; LOC_Os01g62080.2; LOC_Os12g27520.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	94	420	172.7	8.6e-51

Gene Ontology

Accession	Ontology	Name
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0006139	P	nucleobase-containing compound metabolic process
GO:0006396	P	RNA processing
GO:0006397	P	mRNA processing
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006725	P	cellular aromatic compound metabolic process
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0010467	P	gene expression
GO:0016070	P	RNA metabolic process
GO:0016071	P	mRNA metabolic process
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019538	P	protein metabolic process
GO:0034641	P	cellular nitrogen compound metabolic process
GO:0036211	P	protein modification process
GO:0043170	P	macromolecule metabolic process
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0046483	P	heterocycle metabolic process
GO:0046777	P	protein autophosphorylation
GO:0071704	P	organic substance metabolic process
GO:0090304	P	nucleic acid metabolic process
GO:1901360	P	organic cyclic compound metabolic process
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08287	E2.7.12.1; dual-specificity kinase	EC:2.7.12.1	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network