result

Gene information

Detail information of g183249

Location

Gene	Chr	Start	End	Strand
g183249	Scaffold_48646:HRSCAF_431732	390134	393885	-

Sequences

CDS

Protein

Gene

>g183249.t1
ATGTATAAGACTTATAAAGGAAGGGAAGGAGTCGGAAGGGCTATTGATGCCGGTGGGGATGCTCGTACGAATGCACACCTAATAAGGGTAAGGAGAGACACTCAACTTACACGAACTGTGGTGGTGAGGACCAAGTAGTTCCAAATTAAAAGTGGAGTGTTTAAAGACTACATGTGAGTTTCTTTGTAGTCCATTACAATGGGAGGTTCTAAAGAGTTTATGAGAAATAAGTAAATGAATTACTACGGTGGGTGATTCCAAGCAGTTAGTAAATTTAGAAAATAAATGTAGGACTACATGTGGCTATTTCTTCTTACTCCAAAGATTAACCAATTAAATAGTTAAATACTACAGGAGACTGGTCTACACGGTTCAAGTTAAAGAAATAATGTAGAAGTTTACTGCAGTGGGGATTTCATATAGTATTAGACAAAAGACAAACATATAAAGAATGAGTCTAAAAGAGTACTACGGTGGACGATTCCAAGTAGTAATAGTAAGGAATCAAAGCTTAGTAGAAGACTAAGTAGGTACTATGATGGGGGCAATATGAACTCAATAAAGAACGAGAAAGTAATGCGCAAGGGCGCTTCAGTAAATGGACAAGTAAAGATGAAAAATCTATAAAGGAAACAAGGGTAGGTCTGCGTAGGGAGCACAGTATTTGAAACTTGGATTTTAAAGTTAAATCAGGATTCGATTAGGTCAGCGTAGAGTGCACAATAGAAAAGAAAAGTATGTTTAAGGAAGCATATAATTGATGAAGTAAATAGACATAATTGCGTCAGTAGTTTAAAAGGATTATGTACATGATTGATTGAATGGTGAAGGGAAAAGCTAACATGTATAGTGTAGGTTGGTCCCATTATGCATTGTTTTGGAAACAGTATTATTCACACCAGACTTTATGTCTGACCCATGTTTTTTTTATTTTTTCCATAAACTCACGTATATTCATTTGAGTAGACCGAATTTACGGATTTAGACGGGTATGGAATAATGACCGGAGTACGAGGACCAAAGATGAAGCAGGAGGCTCTTTAGCTACTAGAGATTTCGTTTCTACTGCATGAGGGAGTGCGGGTCGCATCTTCATATATAAACCAGGCTCTTTCTTATGTTGTTTCTCTATTATATTTTGACCCATGTGTGGGCATGTTTTTGGAGAAAATATTTACCAAAGTATTGTAAAGAATATATAAAAGAATTAGCTGTGTGATGGAATTACTTAGTTGCTCTGTTTATTTAGCCGTGTATTCATATTATATTGAACTCACTTTAGTCGTCGGAAAATAATTCTGGTGACGCAATAATTCTGGTGATACCTGCAGCATCATCGGGTTTCAAGTGGAGGATGTTACAATAACATTATTAATTTTATTATTTAATTTAAATAACGTTATTAATTTTATTATTATTTCTGTTATAATTTTAAAAACATTAGTAATTTTATTATTAATCTTGTTAAATATCAGTTTTATTATTACTTTAAGTAACATTATTAATTTTATTATTAATTTCAGTAATATTAATATTGGTAATTTTGTTATTAATTTTATTATAAAATAATTTTAAAACGATGGAATTAACAAATAATTTCAAAGCTACTCGACCTAGAGATTTCTACACTATTTTTAATGGTTGATCATCATGCTTCCTATTATAAATGCAATGATATTTATGTTTCGTAAATCATTTCAAATCGAATGATTAACAAAATTTAAATAGAACTTCTTTGTATCGTATGCAAATGAGCATAAATGGAGAGCATAAATGAAGAAGAAGAAGGAAGTGTCGTTGAAATTTTGTTAACCGTTTCATTTGAAATATTGATATACAAATAATCTACCAACGTCGTGCCTATGCCATATACATGAAGTTGACAAGATGTTAGTAAGCTTTCATAGTTAGTTAACTACAGATGATTTATTGATGTCGTGTTGATGCCGAATACTAGATAGGTATTGGTGGTACCAAGTAGGTACACGATGCATTTCTATTAGTGATTGGACAAAAGCTTCACAATGAAGGAAATGAGTTTTGGCATGGACATCAAACTTTTGATACAATATATATTTAGTTATTTGAGAATAGGAGGGATTTATTTCAAGTGAAATACTCGTAACGTTTAGTATGACACAATATTTATTTATTTGAGAATAAGAGAGATACTTAATTCAAGTGAAGCAATATCTTAGTTGGCGCGATGTGGGTTAGTCGACGAATTTATATTTAATGACCAAGTTGTAAAGGCATACAATCTGGACTGGTAATTAAGGATTGTCTCAAGACTTTGATGTAGTTATGGCTTTGGATATTTGTATTGTCAATGAAGACATCTATGTTTTTAAGTTAATTTGATTTTTAATACAAATCTGAATATGTACAGTAGTCGAAAGTGAATTTGTTTGACAGCGTCCTAAAGCCTATACAGTCTACCAAATCAAAAAGGAAAGTCAACTGATTCGCATGCAAGACCAAAAATGAGGCAATTGAGCACGTGCGTACAAACGCAAAAAATGGACCGCATTCAATCCAAGTTGAGAATAAAAAAGCAAAAAACCACCACTAAACATCCATTCAAACGCATCTAAATACAGTGAACTCAAGCCGAAGAAAAGGCACCGAATACTCATGTTTCTTTCAAGACAACCCAAGCAATGCTCATTTAGCTCTAGCCATCGTACACGTTTTCAATACTTGCCTCATCAGCCCCCGCCGACCTCTCATTTTTCGGTTGGCCACCAATTTGCTAATAATAATTTTTATTCTATTTCTAAATTAATTTTTATCCCACTTGATCATGATTATTATTATGATATTATTGTAAAACCATACCAAAATCCAAAATCATGGGTTAAGTTATCGTTTTTAGAGTCGGCCGTCACTCAAAAATAGGAAGAAAGAATAAAGGAAAAGTCTTTATATAACAACACTTGCCACTCTGTTTCTTCAAGTCCTCAAGTCATACCTTTCCACTACTTCTCTACCTCCGTTTTCGTTGTTAATTAGTTGACCCACGCCTCTTCTATCTCCCGTCTTTTATATATATACATATATCTTTCATTTCATTTCATATATCATATCAAAATTATCATTCAGTTCTACATTTGTACTTGCTTCTTACATCTTCACTCTCGATGGAATCGGCTTCTTCACTCTTAATGGAATCAGTCAGCCAGGACGAAGTCAACCACCCAAAACGGAAACGGTCAACGCGTCCCCGGCCGCCGACGGAGGAAGAGCAGCTAGCCCTCTGCCTTCTCATGCTCGCACGTGACTCCCATCTCCTCTTCCAAAGTCAACCCAAACCCATTCACACTTGCAAAATCTGCAACAAGACATTCAACTCCCACCAAGCGCTGGGCGGGCACAAGGCCAGTCACCGAACCCAGCCCGACTCCGAGTCCACCGTAGCAGTACCCGTACCGGGATCCCCAACTACGGGTTTGAGTGGGCCGGGTGCGAAAGGAGGAAGGACGCACAGGTGCGGGATATGCCACCGGACGTTTGGGTCAGGGCAGGCGCTGGGAGGGCACAAGAGGTGCCACTACGACGGGACGATGGGAAGTGGGGCCGGGAGCGGGAACGGGAGTTCGACGAGCGTGGGGTCGACTAGCGTGGATAGAGGGTTCGGGATCGACTTGAATTTACCGGCGGGGTTCGGGGGTAGGTGGGACGGAGGTGATGACGTGGAGGAGGTGCAGAGTCCGGTAACGTTTAAGAGGCCCAGATTTCTTCTTCAAGCTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020409296.1	4.8e-33	zinc finger protein ZAT10
Swissprot	O22533.1	2.0e-20	COLD INDUCED ZINC FINGER PROTEIN 2
trEMBL	A0A251MXV9	3.4e-33	Zinc finger protein ZAT10

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G19580.1	40.93	4e-28	122	AZF2;ZF2	zinc-finger protein 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g183249	AT3G19580.2	193	89	6	96	264	66	257	40.93	4e-28	122
g183249	AT3G19580.1	193	89	6	96	264	66	257	40.93	4e-28	122
g183249	AT1G27730.1	210	70	9	85	263	33	219	40.95	2e-26	115

Ortholog group

Species	Genes
Allium cepa	g183249.t1
Allium fistulosum	AfisC5G06621
Allium sativum	Asa4G04913.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13912.3	zf-C2H2_6	Domain	124	148	42.6	3.6e-11
PF13912.3	zf-C2H2_6	Domain	178	203	41.1	1.1e-10

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0001101	P	response to acid chemical
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006950	P	response to stress
GO:0006970	P	response to osmotic stress
GO:0006979	P	response to oxidative stress
GO:0040007	P	growth
GO:0008150	P	biological_process
GO:0009266	P	response to temperature stimulus
GO:0009314	P	response to radiation
GO:0042493	P	response to drug
GO:0009409	P	response to cold
GO:0009414	P	response to water deprivation
GO:0009415	P	response to water
GO:0009416	P	response to light stimulus
GO:0009611	P	response to wounding
GO:0009628	P	response to abiotic stimulus
GO:0009642	P	response to light intensity
GO:0009644	P	response to high light intensity
GO:0009651	P	response to salt stress
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009737	P	response to abscisic acid
GO:0009889	P	regulation of biosynthetic process
GO:0009890	P	negative regulation of biosynthetic process
GO:0009892	P	negative regulation of metabolic process
GO:0009987	P	cellular process
GO:0010033	P	response to organic substance
GO:0010035	P	response to inorganic substance
GO:0010117	P	photoprotection
GO:0010200	P	response to chitin
GO:0010243	P	response to organonitrogen compound
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010558	P	negative regulation of macromolecule biosynthetic process
GO:0010605	P	negative regulation of macromolecule metabolic process
GO:0010629	P	negative regulation of gene expression
GO:0015979	P	photosynthesis
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031324	P	negative regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031327	P	negative regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0033993	P	response to lipid
GO:0035264	P	multicellular organism growth
GO:0042221	P	response to chemical
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043565	F	sequence-specific DNA binding
GO:0044237	P	cellular metabolic process
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0045934	P	negative regulation of nucleobase-containing compound metabolic process
GO:0048519	P	negative regulation of biological process
GO:0048523	P	negative regulation of cellular process
GO:0048589	P	developmental growth
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051172	P	negative regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051253	P	negative regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:0097305	P	response to alcohol
GO:1901363	F	heterocyclic compound binding
GO:1901698	P	response to nitrogen compound
GO:1901700	P	response to oxygen-containing compound
GO:1902679	P	negative regulation of RNA biosynthetic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1903507	P	negative regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2000113	P	negative regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network