result

Gene information

Detail information of g183422

Location

Gene	Chr	Start	End	Strand
g183422	CHR1	24451457	24453909	+

Sequences

CDS

Protein

Gene

>g183422.t1
ATGCGTGATATCACAATTGTTGAAGCAAGCATCATGAGTAGTAACAGTAGAGATGACCATGAGCATGATCTTGTGATGCCTGGTTTTAGATTTCATCCAACCGAAGAAGAATTAATTGAGTTTTATCTTCGGAGAAAAGTTGAAGGCAAAAGGTTTAATGTTGAGCTCATCACTTTTCTTGATTTGTATCGATATGATCCTTGGGAGCTTCCAGGTACGCAGTTCTTATCTTTCTTTCTTTTTTCCCTTTTCTAGCTAATTCTTGGTTCTTTTGATTAGGGTTACCTTTGTTGGCTTCCATCTTGAATTATGTACTTGTGTTTTAATATAACTTCATTTCTTGAAGCCTTAAAATACTATAATCTGTTATTTATCATTTCATGAGGAGAACAATATGATTTTAGATGCCTAGCTATTTACAGATTATGTTATTACTATTGGTTAATGGACAATTTTGTTTATAAACTGCTTATCATTTCTGATTTAATTATCTGTTGAATTTGTTTTATTTGTTTGGTTAACACAAAAAGAATATGAATCAATTGATCTGAATTTTATTAAGTAGAGTCCATGCTCTTTATCTCACAGATTTCATGGGATCGAGTCTGGATTTATTTTTAGTTGTTAAAATTTAAACATCAACATTTATCATACAAGCGAAATTTGGTATGTAAAAGAAGTAGTTTCGTTAACATTTTCTATGCAAGTAGGTAAGTACTTGCATCATTCTACAAATTAATTAGGTAATTTACATTAGATAATTCTCTGACAAAATTTTCCATTCAAAGTTTTGTGTAAGCAGCTAGCATGCACATTTTAGCTTAATTATTCATTTGTCTTCTACCAACAACTGAAAATAAAACAAACTTGCAGCATTAGCAGCCATAGGTGAGAAAGAATGGTTCTTTTATGTACCAAGGGACCGAAAGTACCGAAATGGAGATAGGCCGAACCGTGTAACTACATCCGGATATTGGAAGGCAACGGGAGCTGATAGGATGATTCGAGGTGAAGATTCTAGACCCATTGGCCTCAAAAAGACACTTGTGTTCTATTCGGGGAAGGCACCAAAAGGAATTAGAAGTAGTTGGATCATGAATGAGTATAGGTTGCCACATAGCGACGCCACCGATAAGTTTCAAAAGGTAACTTATTTATGTATTTAGGATTTGATTCACTTGTATCATTGTTTTTCTCTCTTTAATTATCATATACTGGCTAGGGATAGATAATATCATCTTCTTAAGTAAATTATTTTCATTTTAGATTACATTTTGATTTATTTGATAACTGCAAAGGTCAGTAATAATTAGCTTCTTCTTTTCTGGATGGTATAACAATCTCCTCCACAATTTACTTTGTTAGAATTTCAAACCCTAGTTTACTACTTTGTATTTCTTCTTCTTCCTCTTCTCAATTTGTTGTTTGGTGAATATAAAAATATTGGATATAAATGTTATACTACTTTTCTGACTATACATTGCCTATTTAATTAGCTTCTTTCTAGTTTGAAATCTTCCAACATTCATCAACTATTTGATTTAGTAGTTTATTAACATGACATAATGTAATGCGAATTTCAACTACTAGATATGTATGCATATGACTTTATCTTTAAACTAATAATTTTTTTACATTTAATCTAACTGTTTTAAGGAACTTTTCTCTTGTGAGCATTTTATGTTCTTTATGTTACACAAGTTCTCATGCCCATGCAATCCTAATTTAATTACTCCTACATTTTCATTCAATATTTGTAACCTAAAAGCTAGGAATCAAAAGCATAACCTTTTCTCGGAAAAATATTTAATTTACACCATCTCAATATACACAATGCACGCTTAATCATTTTTCAAGGAAACAATGAGAGCAAGGAAAGACTTCAATCTTCTTACAAATCTTGTAAACTAATAAGTTCCTGATAATGGTTGTTTATTCCAAAGTTATCTTTTAGTAACTAACGCTGCACCAAAATTGTTTCATAGGCTGAAATCTCACTGTGCCGAGTATACAAAAGAGCCGGTGTAGACGATCATCTCCATCCTCTTCCAAATTCCAGGGCATCATCTTCAGTAAACACCGAGTTGCCACAAACCCTAGCCCCGATTGTAGGAGATTCATCATCGTCTTCACAATCATCAATGGACAAAAAGACAGCAACCAACTTCTTCAATACTACAACAACCACCAATTCAGTCGAAGAAGTTGGAACCACACTGCTCACGCAACCAAAGAACACAAATGGCACGTTAACTTCTCTCTTAGCTCCTAATACTTTTGCTAATTACATCGATCATAACAATGTTGTAGTAAGCACTAGTGCTATAGACCAGCTTGTTAATCCGTTACCGCTGATGCAGTCTCAATTGCTTCCTTTTGGTATTTCGGATAAGTTATGGGACTGGAATTTACTGCCAGAGTCTGGAAGAGACCACTACTCAAATTTCAAGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	THU54246.1	1.1e-89	hypothetical protein C4D60_Mb10t23020
Swissprot	Q9ZVP8.2	1.7e-87	Protein LONG VEGETATIVE PHASE 1
trEMBL	A0A833QZ64	8.1e-90	Transcription factor JUNGBRUNNEN 1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G02450.2	91.03	8e-86	313	ANAC034;ANAC035;AtLOV1;LOV1;NAC035	NAC domain containing protein 35

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g183422	AT2G02450.2	156	13	1	24	179	50	204	91.03	8e-86	313
g183422	AT2G02450.1	156	13	1	24	179	50	204	91.03	2e-85	312
g183422	AT2G17040.1	154	61	2	23	174	4	153	56.49	1e-50	196

Ortholog group

Species	Genes
Allium cepa	g183422.t1
Allium fistulosum	AfisC1G08305
Allium sativum	Asa7G06751.1
Arabidopsis thaliana	AT2G02450.1; AT2G02450.2
Oryza sativa	LOC_Os01g66490.1; LOC_Os05g34600.1; LOC_Os08g02160.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02365.12	NAM	Family	27	151	86.6	1.4e-24

Gene Ontology

Accession	Ontology	Name
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network