result

Gene information

Detail information of g183483

Location

Gene	Chr	Start	End	Strand
g183483	CHR7	5802023	5803688	-

Sequences

CDS

Protein

Gene

>g183483.t1
ATGATAGTTTCCCTAAAAACTCTTATTGCTCATTGGCTTAAGGAACCATCAGTTGTAGGTCTTTCAAATAAAATAAGAGAGTAAAGCTCATGTTTTCCGTTAATAACATAATTAATAACTAATAAACTACAGTTACATACAACGGGAAATCCTTTTATTTTGTTATAATCGTTTATTCGTTCAGCTACTCTGGGCTTCTCAAAAAGTTCGTGGTTATGAACTTCAGTACACCTTTAAGGTATATCCCTTTTATTTTTGTTACAAATTTATGGTTATCGTAAATTCAACAACCTATTTTTTTACATCATCATATTCTACAGACATAATTTATTGCGTCATTAATAGGATGGTGGCATTCTTATTACCACCTACGATATTGTCCGGAATAATTACAAATCATTGCAAGGTAACCATTATCAGGATGTTTATGACAGCACAAATGAAGAAAACTTGTGGGACTACATTGTGCTTGATGAGGTTGATTTTCGCTTCATTGTCCATTTAATTTGTAATATTGATTTGCACATTGTTTTTATAATTTCCCCTACCATTTTTGTTAAGTGTCACTTACTTAGGAAATAAGCTCGCAACATAGTCTATTCAAACTGCGTGAATTGCCTTTGAAATATAGTGTACTTTATACAGTAATTGTTTGAATTAGATTATGTTTTACCTATTGTAATTTATAAAATATATAATATTACATGCAACCTAAGTTTGTAGCTCATAAAGTATTTTCTTAATGCTTTACCTACCTGAAAGATTGATCATCAGTGTGTGATTGTTATTCGTTTAGTGTAGTGATCATGATCAGAACATGTCATTTTTTGTAAATTCAATAGCATCCCAAATATGTGATAGTATCATCTAAACTCAAGTTGTGAGTGACAGAACGAAATTTGATGCGCCGCTGAAATAGTTATCTAAATTTATTACTGGTCAACCCAAATGATTATTTTGCTTTTAAATTGTAATCACTAACAGCTCCGGCAGTAATTGCTAACAAATAAAATTTGGCCAGCTAGTATGTTTGTCCCCCTTCCGCAACAAACTTCTAAGGATATATCATATATCTGATCAAGTTTGATATTTTAGTACAAAATAGATAACCTGCTTATGAAGCCCAATTTGATTTCTGAGGAGCACACTGTATTAATCTTTTCCCAAACACGAAAAATGTTGAATCTTATCCTTTATAGTTTACGAGCTGTTTTATATTTTATAGTCCTATAGTTTGGATATATAAAACCTTTGAAAAGAATCAGTATATGTAATTAAATCAACTTATTATAAGTACCTTTAATCAGCGAGTTATCAAATAACAAGAATTGGGAACTTTATTGATTCAGTACCAATACTTCTTTATGGAACTGAACTGAATATAGCAAAAAAAATTGCTTGTACCGCTCGTAACCGACCATAACATTCATAATAAACTTTGAACCGTTTGAACAGTGCTTCTAAAAGACAACCTGCTGTCGTTCTTCTTCTTAATTTACCCCAAAAAATCCTAAATCCAATAGCCCCAACGTCGCCATTTCGTCCTCGCGACCGGCTGTCTCCCCCATCGACGATTCACTTCCGCTTCAGAAAACTTCATCTTCTCCGAGAGATTGCAAGCCCTGGCTTACTTCAAACCCCCAAATCGATTAGACTCCATTTCTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020247322.1	1.1e-12	protein CHROMATIN REMODELING 24
Swissprot	Q8W103.1	2.1e-08	DNA excision repair protein CHR24
trEMBL	A0A5P1E0Y9	8.0e-13	Protein CHROMATIN REMODELING 24

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G63950.1	44.00	1e-10	62.0	CHR24	chromatin remodeling 24

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g183483	AT5G63950.1	75	32	2	1	65	429	503	44.00	1e-10	62.0

Ortholog group

Species	Genes
Allium cepa	g183483.t1
Allium fistulosum
Allium sativum	Asa0G03643.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
-	-	-	-	-	-	-

Gene Ontology

Accession	Ontology	Name
GO:0000018	P	regulation of DNA recombination
GO:0000019	P	regulation of mitotic recombination
GO:0008150	P	biological_process
GO:0010038	P	response to metal ion
GO:0009893	P	positive regulation of metabolic process
GO:0010035	P	response to inorganic substance
GO:0010604	P	positive regulation of macromolecule metabolic process
GO:0045935	P	positive regulation of nucleobase-containing compound metabolic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0046686	P	response to cadmium ion
GO:0031323	P	regulation of cellular metabolic process
GO:0031325	P	positive regulation of cellular metabolic process
GO:0042221	P	response to chemical
GO:0045951	P	positive regulation of mitotic recombination
GO:0045911	P	positive regulation of DNA recombination
GO:0048518	P	positive regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051052	P	regulation of DNA metabolic process
GO:0051054	P	positive regulation of DNA metabolic process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051173	P	positive regulation of nitrogen compound metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K20093	ERCC6L, PICH; DNA excision repair protein ERCC-6-like	EC:3.6.4.12	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network