result

Gene information

Detail information of g184970

Location

Gene	Chr	Start	End	Strand
g184970	Scaffold_48885:HRSCAF_431971	94400	100223	-

Sequences

CDS

Protein

Gene

>g184970.t1
ATGGCAATTGTTCCTGTTGTTGCAACTTACGGATCTTTAATAGATATGGAAGAGATTGGAAATTCGAGAGAATCCATGCTGAATCTATTGAAATCTCAGAAGGCTCTTTTTCATAGTCAGGTCAACGAGTTTCATAGAATTGTAAATCATCAGTGCAAACTTACTGGAACCAATCCTTTGGCTCAGGAAATGGTAATTTTCATAACAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATGTTTTGCTTTGTAGGTTAGATAAATTGAGCTTAATTTGTAAGTTAGTCTGCCATATCCATCATTCATGTAACACTGTATTTTATTGTTGATTAATGGTTTGGTTTGTTTGCTTGTAGGCTGCTAGTTCATTGGGCTATAAGACTGGTGAGGGTACAAAATTTTGCATCTTATATTCTTTATATGATCCCACTAATTATATCTTTCCAATTAACTTAAGGAACTGTCAAAACATTTGTTGATCAACTTTTTGATGTATTGCCATTCGGTGAGTTTTTCATGTTAATCAAATTGTTATAAATTTACACAACTTCCTGGGCCGCTGGTTTTACTTTTTGTGTATGCCATCGAAGGCTCCATCTGGAATCCACTTTTTGAGTTTGGCGTACAGCCATCTTATGGTGTTACAGTGTCTTGTTTTGTCATTTATAATGTCCCTCGTTAGAGTTTTAAAGTTTAGAAACATCTGTGCTTAGTGCTCTACTCTCTGCTCTGCCCATAATAATATGCTTTTTATTGTATTCGTGACGCTATAGGTTTTTACCTAAGATTTTTCTTCTTGTTTTTTTTCCTTTAACATTAAGCTCACCCTACCAAATTACAGTCTTTGCCGAATCTAAACTATGAAAATATGTAGAGGTAATAACTCATACGATTAGCCATGCTTGTCCAAGTAAAAGACGACTACACTACCAATAATTTTGAACATTTTTGAAAAAACTGCAACAAGCTATGGTAAGGCACTCTAGTCTAAAAGTCTCGTAACAAGCATTTTCAACCACCCATGCTTGACTCCCTTAGCCAGTTAATGTTCAGTGTATTACTTGTAAATTATAATATTTTTTTATCAGGGAAAAAAGTAAAAGATTCACTCAACCCTAAAGCATTGAAGTATTTGCAATCTGTATTTTCAATAAAGGATACAACTGGCAAGAAAGAGACCCGTGAAATCAGTGCTCTGTGCCGAATAACAGTTACACAGGTTGTTTGTTGTTTTGTGTTGTTTACTTTCTGGATTTAACATTCTTTATTATATGCTATATACATGTGCAAACTTACTCGAGTTATCAGAGTTGTGCACCCTATTTTATTTTACCTTGTTTTTATCACACACAGTCAACAAATGTGGGTTCTTCGAAGCTACTTCGCGACCTAAAATTCAATATTTATGATTCTTTTTTTCAGGATTCTAACCTATATTGGTATAATTTGGAACACGATATTATTAGAAACGATTTAGAAATCTTCTATGAGTTATCTGTTCATCAGATCGTCAAATATAAGCAAAAAGACAAAAAATTACTTTACATACCTTTTTACGCAGGTCAGGGACTTCTTTAATGCTGAACGGTCAAAAGTCAAAAAACTTGTTCAAAAGTCGGAAAGAATTGCAAGTGATTTTTCCAAAGCAATCGCTGTTGGATGTTCTATTCCAAATCAAACACAATCTTCAGCCAAAAATGAGCTTGTTACTAACATCACGCCCAACAGTACAATTGTTAAAAACGGTACAACATGTTCTAGCAATCAAGGAAGAGTTACATCCGTGTCCTCACAATCTCCGTCCACCCCAGAGGATGTAAATTTGTTATCTACAGAAAGTGTAGGAAGCTCAAGTAGCTTTACTCAGGGTTGCACAGGGGACTTTGAGAAATCCGGGAATGTTATTTTACCATGGGATTCAGAAATCCATGGGAATTCACGGTATTCTCAAACTGAACATATGCAGATCCTTGGAAACTTAGAAGAAGGATTCCAGGAAAATGTTGGAAATTTTAATGACTTGTATACACCCCTTTCCTGGTGTCCAGGAAATTCAAACAATTTCAGTACAAATATGATGAAAGTTAGTACCAGCTTCCCTAATGTTTCTACAGATATAAGAAATGTCAATTCAAATACTTCCACTCTTAGTAGAAATATTAGCAATGTCACTACTGCCGCTGTTAGTACAACTGTTACCGATGGTGCAGATATTTTGGAGAACAATGTCAATGCTTCCTCAGTTCAAGATGGACAATTTTCTATCAACACAGACACCACACATGTCAAAGAAGGAAGTACTCATGGTGTTGATTCCAGTGATAAAGAGTTTATAGAGAGGATTTTCAGCATGATGAGGAAAGAACAAACTTTTGCAGGTCGGGTGAAACTAATGGAATGGGTTCTTCAGATCCAAAACAAAGCTGTCCTGACCTGGTATCAAGTGTATTTGTTTTGGTGGTGTTAAAAGATGGATTATTTATGATTATGGTTAATTTGTTTTCCAGGTTTTCTACTAAAGGTGGTATTGCAATTTTAGCTTCATGGTTAAATGACGCTGCACTTGAAGAACAAACAACTGTGCTTTCTGTCATTTTTAAGGTGGTGTACTTTTATGTACTTGGATAAACTTCAATAAATCCAATACACTGACATATGGTGATTTCTTAGGTCTTTTGTCACATGCCCCTTGAGAAAGCTCAGCCACTGCAAATGTCTGGCATTTTGCAAACTGTTAACAAGCTGCGATTTTATAGAAATCCAGGTAGGGTATACTTTATTATGGTCTTAGAAATTTTGCCTAAATTGTTATCTGATCCCTTTAATAAATGGGCATAATGTGCTGACCTGTTCATGAACCTTACACATGTTTGCCTGCTATATCTAAAAGAGTGTGCTTGCTTTGCTTTCATGAAGACTTATTACAGGATAGCATGTTGATGTTTGTGTTTGTCTTGTTCCTTGGCTGTCATGACTGAACATTTATCAGCAAATCTTGGAACTTACTAGTATTGAAGGCAAAAGTTTTTTTTTTTCTTTTTCCATTTAAAACCTTTTGGACGGAATGAAGTATATTTGTGTTGGAAATAACATCCAGTATTTATTTTTTTATGAAATAATTCGGGACATTTTTTGTCAAGGTAAATAAGTTAAGGTTGTTCTTGTGCACTTCTGATTTGATACAAGTTTTAGATTAAACATAAGTGGTGGGCCATAGGAATTGCGATTGCCCTAGTAAATTACTCATATCTTAGATTCCTCGTTATTTAAATTCCCATGAAGAGTGTGTTTTACTAGGATTGATATGAAAGTTTCTGGTCCATTATACGTGGAAGAATATAGTGTTGAACAATCATTGCTACCAGCACAAACTAAATAGAATAAGTCTCTTATTTCTTTCAACTTTCGGCAAAATGAATTTGTTACTCTTTTATTCACTGCTATTATTTTCTTTTTAAACCTGAAATATTATGTTTAATGTTTAATTTTTGAAACTTACAAAGCTTATTCCACAATCAGACATATCAAAGAGAGCAAAGGTTCTTCTATCTAGTTGGAGCAAGATGGTTGTGAGAGCTCAAGTGCTTAAAAATGCCAGAAACCATCTCAAGAGTGGGCCGCTTACAAAAAGGCATGATATCACTTCCAACTTCTGTTTCTTATCCATACTATTGTATCCTTTAATTAATGTTTTTATATTCTTTCATCTATAGGAAAAATGGAGCACTGCATGATAAACTAAACCTTGATATTCCTGTAAGTATATGTGAAAGTAAGGAGTTGCATGTCTTCAGTTTGGCATATGGTTTTTAACTCATCTGTTATTTCTTGTGGTATGTAGGAGGAGATCTATGCTTTTGCACAAGATGCAGAAGATCACAGGTAAATATGTCCATTGTTTTCTTTTCCTTATTTTAAAGTTTTACAGCCTCAAGATTAACCACTCAGTTTTGCATTTGACACATTTCTATATTCATTATGGGCGATGAGAACTACATATGCCAGTCATTTTAACACACTTTAAATATATCACTATTCTGGTTTTAGGGGAACTGAGCCTGAGCCTGGGAATGGATTAAAGCTGCTTACAAATGATACGTCTAGTAAAAAGCAAGAGCTATTTATTTCCGCTAAAAGTATCCTTCTGCCTAAGTACCGAAATCTAACTCCATTGGGGCAAGCAATAAAATTTGTAGGCTTTTTCATTTTGTTTATTATATATTTTTTCTTAGAAGCTGGAATCTCGCAGGAGTTTAACGTTTCTCAGTAAGAACCGCTAGTCGGTATTTCTTAGTTGGGACTTGACAGTATTTTGTTCCAAATTTGATGGAAACGCGTTGCAAAGTAGATGAAAACATGTTTCAAAGTAGATGAGAATTTTTTTATTAAGTATTGCCAATATTTCAAATATGATTTATTTGAAATAATTGAATAATTACTATACATATATTAAATCGAACAAGTGAAAAGAAAAATAGTATTATTTTTACAAGAAAATAAATTTAAATAATTATTAACATTTTTTCATTTGTCACAAATTATCATTAAATAATTATTGGCGAGGTTTCAAATGCGAATGATCTTTTTTTTTGAAAGAAAATTGAATGACTACTGTACATATATTAAATTGAACAAGGAAAAATATATAATATTATTTCCTTTTATGTTTATCAAATAACCAATAGACGATCAACAGTTTTTCAATTGTCACAAATTAATTCATGTTCTTATATTCTGTTATCAAAATTTCTATCTGAAAATATTTTTAGTACATTTGAATTGAATATCTTGTTTTGTCTAGTAAAATTGTTGGAGTAAAGAGGCAATAATACAGTAAATTTTGACAAGTATGAACTGAAATATTTATAAAGAACTCATTATAATACTTAATATTAGTATGTTTAAACAATTTGAATAATTCTTTATTAACTATAGCAACATCGTATAATGCAACAAACTTTATAGCAAACCGATAAATGTAACTTTTCATTAAAACTCTTTTCCATCTCATTTCCAATTTTGCAATCACATATTTCTGTTTCTGTTTTGGTATCCATTTTGGTTCCTGCTCCTGCTCTTTGCTTCTAAATAATTTTGAACTTCTTTCGTCATAAACATAGAATGCTAACAGTAGATGCTAAGCTACATGTGAAGCAGCGTATCCAGCCATTATTTTCATTTTCATTCGTAGAAACATATTTGAATTTTCCTTGACATTAAATATAGAAACTAAAGAACGCAGGAAAGTTCAGCTGGTTGAACATCCTGATAGTAAATTAGGAAGAAATACAACAATAGCAAAAGTAACATCTTCAAATCAAAGCCGTCCATTGTCAGCAGATGACATTAAGAAAGCAAAAATGCGAGCGATGTACATGCAAGAAAAGCAGGGGAAGGCCTACTCTCCAACAGAAAATGGTCAGTTAAACGATGGTAATACCCCTTCTGCAGTTAGGAAACCTTCTCCACATAACCAAACCCCTTCAACTTCTAATGCACCTCAGCCATCTCGGTTGAGAATAAATGAAATAACGAACCCTCAAGAAAGGCTAATGGAGAAATTGTTGAGAGTTCAGATCCAGTGGTTTAGACCACCAGGTACTTGTGTTACATGTTTCCTCGTATTTTTGGTTTCTTATTTGTCAACTGATTTTTGTTTAAGAGTGAAGGTAGTTGTCATTATCGAGTCCAACTTCAGCCACTTGGGATTCTGGATAGAATATGATTTAATATATCTACTCATTTGTTCTTTATTTACATGTTTTGATTTGTTTTGTTTTTATTTTTGGTTGCTGCATTGTGTATTTCAATTACTATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020250651.1	2.1e-110	homeobox protein LUMINIDEPENDENS
Swissprot	Q38796.2	7.4e-76	Homeobox protein LUMINIDEPENDENS
trEMBL	A0A1R3L5N5	2.9e-109	Homeobox domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G02560.1	49.06	1e-61	234	LD	Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g184970	AT4G02560.2	265	124	6	367	623	189	450	49.06	1e-61	234
g184970	AT4G02560.2	119	48	0	18	136	9	127	59.66	5e-36	149
g184970	AT4G02560.1	265	124	6	367	623	189	450	49.06	1e-61	234

Ortholog group

Species	Genes
Allium cepa	g184970.t1
Allium fistulosum	AfisC2G01135; AfisC2G04677
Allium sativum	Asa6G02241.1
Arabidopsis thaliana	AT4G02560.1; AT4G02560.2
Oryza sativa	LOC_Os01g70810.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08711.8	Med26	Domain	451	488	26.7	3.8e-06

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0008150	P	biological_process
GO:0009791	P	post-embryonic development
GO:0009889	P	regulation of biosynthetic process
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022414	P	reproductive process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network