result

Gene information

Detail information of g186969


Location
GeneChrStartEndStrand
g186969Scaffold_49144:HRSCAF_432230441588442001+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020265561.12.5e-25uncharacterized protein LOC109841104
trEMBLA0A5P1F0Q61.8e-25CaM_binding domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT1G21580.140.372e-1474.7Zinc finger C-x8-C-x5-C-x3-H type family protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag186966.t1; g186969.t1
Allium fistulosumAfisC6G02779
Allium sativumAsa2G04261.1; Asa8G03963.1; Asa8G03977.1; Asa8G03978.1; Asa8G03979.1; Asa8G03980.1; Asa8G03981.1
Arabidopsis thalianaAT1G21580.1
Oryza sativaLOC_Os06g43120.1; LOC_Os06g43120.2

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
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Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003723FRNA binding
GO:0003824Fcatalytic activity
GO:0004518Fnuclease activity
GO:0004519Fendonuclease activity
GO:0004521Fendoribonuclease activity
GO:0004540Fribonuclease activity
GO:0008104Pprotein localization
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005654Cnucleoplasm
GO:0043231Cintracellular membrane-bounded organelle
GO:0005847CmRNA cleavage and polyadenylation specificity factor complex
GO:0005849CmRNA cleavage factor complex
GO:0006139Pnucleobase-containing compound metabolic process
GO:0006378PmRNA polyadenylation
GO:0006379PmRNA cleavage
GO:0006396PRNA processing
GO:0006397PmRNA processing
GO:0006403PRNA localization
GO:0006405PRNA export from nucleus
GO:0006406PmRNA export from nucleus
GO:0006611Pprotein export from nucleus
GO:0006725Pcellular aromatic compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0006810Ptransport
GO:0006886Pintracellular protein transport
GO:0006913Pnucleocytoplasmic transport
GO:0008150Pbiological_process
GO:0009987Pcellular process
GO:0010467Pgene expression
GO:0015031Pprotein transport
GO:0015833Ppeptide transport
GO:0015931Pnucleobase-containing compound transport
GO:0016070PRNA metabolic process
GO:0016071PmRNA metabolic process
GO:0016787Fhydrolase activity
GO:0016788Fhydrolase activity, acting on ester bonds
GO:0016973Ppoly(A)+ mRNA export from nucleus
GO:0031123PRNA 3'-end processing
GO:0031124PmRNA 3'-end processing
GO:0031503Pprotein complex localization
GO:0031974Cmembrane-enclosed lumen
GO:0031981Cnuclear lumen
GO:0032991Cmacromolecular complex
GO:0033036Pmacromolecule localization
GO:0034613Pcellular protein localization
GO:0034641Pcellular nitrogen compound metabolic process
GO:0042886Pamide transport
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043233Corganelle lumen
GO:0043631PRNA polyadenylation
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044428Cnuclear part
GO:0044446Cintracellular organelle part
GO:0044451Cnucleoplasm part
GO:0044464Ccell part
GO:0045184Pestablishment of protein localization
GO:0046483Pheterocycle metabolic process
GO:0046907Pintracellular transport
GO:0050657Pnucleic acid transport
GO:0050658PRNA transport
GO:0051028PmRNA transport
GO:0051168Pnuclear export
GO:0051169Pnuclear transport
GO:0051179Plocalization
GO:0051234Pestablishment of localization
GO:0051236Pestablishment of RNA localization
GO:0051641Pcellular localization
GO:0051649Pestablishment of localization in cell
GO:0070013Cintracellular organelle lumen
GO:0070727Pcellular macromolecule localization
GO:0071166Pribonucleoprotein complex localization
GO:0071426Pribonucleoprotein complex export from nucleus
GO:0071427PmRNA-containing ribonucleoprotein complex export from nucleus
GO:0071702Porganic substance transport
GO:0071704Porganic substance metabolic process
GO:0071705Pnitrogen compound transport
GO:0090304Pnucleic acid metabolic process
GO:0090305Pnucleic acid phosphodiester bond hydrolysis
GO:0090501PRNA phosphodiester bond hydrolysis
GO:0090502PRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0097159Forganic cyclic compound binding
GO:0098787PmRNA cleavage involved in mRNA processing
GO:0098789Ppre-mRNA cleavage required for polyadenylation
GO:1901360Porganic cyclic compound metabolic process
GO:1901363Fheterocyclic compound binding
GO:0140098

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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