result

Gene information

Detail information of g188646

Location

Gene	Chr	Start	End	Strand
g188646	CHR3	172663938	172664715	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020241926.1	2.9e-59	homeobox-leucine zipper protein HAT4-like isoform X2
Swissprot	P46665.3	8.4e-35	Homeodomain-leucine zipper protein HAT14
trEMBL	A0A2I0A3Y1	2.5e-36	Homeobox-leucine zipper protein HAT3

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G47370.1	46.31	3e-42	168	HAT2	Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g188646	AT5G47370.1	244	70	7	1	184	1	243	46.31	3e-42	168
g188646	AT4G16780.1	177	64	3	34	194	77	252	54.24	5e-42	167
g188646	AT5G06710.1	142	46	3	61	195	178	315	59.86	2e-39	158

Ortholog group

Species	Genes
Allium cepa	g188646.t1
Allium fistulosum	AfisC3G03051
Allium sativum	Asa2G02373.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04618.9	HD-ZIP_N	Domain	37	64	22.4	0.00012
PF00046.26	Homeobox	Domain	78	130	64.4	5.6e-18
PF02183.15	HALZ	Family	132	166	37.9	1.4e-09

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005515	F	protein binding
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0000902	P	cell morphogenesis
GO:0016049	P	cell growth
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0007165	P	signal transduction
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0040007	P	growth
GO:0007154	P	cell communication
GO:0046983	F	protein dimerization activity
GO:0007275	P	multicellular organism development
GO:0009653	P	anatomical structure morphogenesis
GO:0009888	P	tissue development
GO:0008150	P	biological_process
GO:0008283	P	cell proliferation
GO:0042802	F	identical protein binding
GO:0009314	P	response to radiation
GO:0009416	P	response to light stimulus
GO:0009628	P	response to abiotic stimulus
GO:0009639	P	response to red or far red light
GO:0009641	P	shade avoidance
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009733	P	response to auxin
GO:0009734	P	auxin-activated signaling pathway
GO:0009735	P	response to cytokinin
GO:0009755	P	hormone-mediated signaling pathway
GO:0009791	P	post-embryonic development
GO:0009826	P	unidimensional cell growth
GO:0009889	P	regulation of biosynthetic process
GO:0009890	P	negative regulation of biosynthetic process
GO:0009892	P	negative regulation of metabolic process
GO:0009908	P	flower development
GO:0009987	P	cellular process
GO:0010016	P	shoot system morphogenesis
GO:0010017	P	red or far-red light signaling pathway
GO:0010022	P	meristem determinacy
GO:0010033	P	response to organic substance
GO:0010073	P	meristem maintenance
GO:0010154	P	fruit development
GO:0010218	P	response to far red light
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010558	P	negative regulation of macromolecule biosynthetic process
GO:0010582	P	floral meristem determinacy
GO:0010605	P	negative regulation of macromolecule metabolic process
GO:0010629	P	negative regulation of gene expression
GO:0016043	P	cellular component organization
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022414	P	reproductive process
GO:0022622	P	root system development
GO:0023052	P	signaling
GO:0070887	P	cellular response to chemical stimulus
GO:0031323	P	regulation of cellular metabolic process
GO:0031324	P	negative regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031327	P	negative regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0032870	P	cellular response to hormone stimulus
GO:0032989	P	cellular component morphogenesis
GO:0042221	P	response to chemical
GO:0042803	F	protein homodimerization activity
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043565	F	sequence-specific DNA binding
GO:0043621	F	protein self-association
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0045934	P	negative regulation of nucleobase-containing compound metabolic process
GO:0048364	P	root development
GO:0048367	P	shoot system development
GO:0048438	P	floral whorl development
GO:0048467	P	gynoecium development
GO:0048507	P	meristem development
GO:0048519	P	negative regulation of biological process
GO:0048523	P	negative regulation of cellular process
GO:0048589	P	developmental growth
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048856	P	anatomical structure development
GO:0048869	P	cellular developmental process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051172	P	negative regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051253	P	negative regulation of RNA metabolic process
GO:0051716	P	cellular response to stimulus
GO:0060255	P	regulation of macromolecule metabolic process
GO:0060560	P	developmental growth involved in morphogenesis
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0071214	P	cellular response to abiotic stimulus
GO:0071310	P	cellular response to organic substance
GO:0071365	P	cellular response to auxin stimulus
GO:0071478	P	cellular response to radiation
GO:0071482	P	cellular response to light stimulus
GO:0071489	P	cellular response to red or far red light
GO:0071495	P	cellular response to endogenous stimulus
GO:0071840	P	cellular component organization or biogenesis
GO:0080090	P	regulation of primary metabolic process
GO:0080127	P	fruit septum development
GO:0090567	P	reproductive shoot system development
GO:0097159	F	organic cyclic compound binding
GO:0099402	P	plant organ development
GO:1901363	F	heterocyclic compound binding
GO:1902679	P	negative regulation of RNA biosynthetic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1903507	P	negative regulation of nucleic acid-templated transcription
GO:1905328	P	plant septum development
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2000113	P	negative regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0104004
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network