result

Gene information

Detail information of g188978

Location

Gene	Chr	Start	End	Strand
g188978	Scaffold_49454:HRSCAF_432540	338796	344743	+

Sequences

CDS

>g188978.t1
ATGTCATCTGTTCAAGGTCAAGTCAAAGCTATCAGTTCTTTCTCAATATTGGATGAAATGAGACTCTTAGGAGAAGCTGAGGCCAATCCAGGTCCAAGAAAAGATATAAACTCTGAACTATGGCATGCTTGCGCTGGTCCTTTAGTTTCTCTACCTCAAATTGGAAGCCTTGTATATTATTTTCCTCAAGGACATAGTGAGCAGGTGACAGCATCAACAAGGAAAATATCAAATGCTCACATTCCAAACTACCCATCTCTGCCATCTCAATTATTGTGTCAGGTTCACAATGTAACACTGCACACTGACGGGGAAACTGACGAAATATATGCTCAAATGAGTCTCCAGCCAGTGAAATCTGATGCAGATGTCCTTCCGATTCCAAAATTTGGACAAATAACTATAAGCAAGCAACCAAGTGATTTTTTCTGCAAGATTTTGACTGCTAGTGATACAAGTACTCATGGTGGTTTTTCAGTGCCTCGTAGAGCTGCTGAAAAACTATTCCCTCAATTGGATTATTCTATGCAACCTCCAAATCAAGAGCTAATTGTCAAAGACATACATGATAACATTTGGACATTTCGGCACATTTACAGAGGGCAGCCAAAGAGACATCTTTTGACAACTGGTTGGAGTTCATTTGTGAGCATGAAACGACTTAAACTTGGTGATTCTGTTTTGTTCATCCGAGATGAGAAGTCCCAATTGCTGTTGGGAGTGAGACGAGCAAAGAAAGGTCAGCAGACCTCGTTGCCATCATCAGTGCTTTCTACAGACAGTATGCATATTGGAGTACTTGCAGCTGCAGCCCATGCCGCAGCTAGTAGAAGTCCTTTTACTATTTACTATAACCCAAGAGCATGTCCTTCAGACTTCATTGTTCCTTTGGCTAAATACCATAGAGCAGTATATGCTCAAGTGACAGTTGGGATGAGATTCGGAATGATGTTTGAAACCGAAGAATCAATTAAACGCAGGTTGATGGGAACAATTGTAGGAATTAGTGATTTCGATGCATTAAGATGGCCAAACTCAAAGTGGCGAAATTTACAGGTGGAATGGGATGAACAAAGTTGTGGTGAAAGGCCAGATAGAGTTAGCATATGGGAAATTGAAACTCCTGAAAGTCTATTTGTTTTCCCCACTCCATGTTCTAAACGACAATGTCTTCCTGGATTTGTTGTTCCAAGTATGGAAATGGGATATGGGAACCCAAGACCATTTTCGCAGCTTCAAGAAAATACATCCGATATCATGCATCCATCAGTATCCAACGTTGCTTCAGACCAGCTGCTAAAAATGCTGCTTACACCACAGAATCAATTCTATAATAATCAGTTCAACTGTCATCAGTCAATGTATGCAAGCGCACTACAAACAAATCCATTAACACAACCAAATCATTTTGCCCCTTCACAAAATATTACCCTGCAATCTCAAAAAGGGAAGTGTAGCAAGGATAAAATTGAGACACATGTTGCTAATCAAGAACAAGTTAAAGAAGTTCAAAGTTGTGATTCTTCTTTATTTCAAGAACTGATTAAAAATCCAAACTTGGGGCATGATGAAGCGGAGCATGTGGAAAAAAACAACACCGTAAGCAGCACAAACCCTTCTAAGCAAGATCAGTCATCATGTTTTCAATCTCCTATGGATATTTTAAAAGAACCCTTATTTTCATTTAGCTCGAGTTTCCAAGATTACCCTTTACTATATTCTTCTGATAACGTTTCTAGCCCCTCAGCTGATATTTCTTCTATAGTGAATCGAGACATGTTAAACAATTTCGATTCATTTCAGCTGTCTAGCTACTCACCTTCGTGCATTCAAGAGTTTATTGGCTATCATGATCACGAATCGGATTTGCATAAAATAACCAATTCTTGTGCAGTGAAGAAAGACTCTTCTGAGAAGAGTATTAGCAATCATGAAACATCCAACAATTTACAAGTTGAAGCCAATAGTTCTTATGTGTCAAGTGCAATACTAGAAGAAATTAGTGATACGAAGAATACTAGTTTCTGTGCTCCTTCAGATGATTTGTTCAGTACTTTTTCCGATACCCAGTTGCAACCTCTTCTTGATATTCCAGAATGTTCTGCTGGTACGTCATCGGGAAGCATGGACATAAGTGAATGTAGTTTAGTAAGAAGGCGCTCCATGAAAAACGTGGCACAACAGCGTTTACGTACATATACGAAGGTGCAAAAGGCGGGATCTGTTGGCAGATCGATTGATGTGTCACGCTTCAAAGACTATAACGAACTAAAATATGCAATTGCATGCATGTTTGGGCTTGAAGGCAAGATTGATGATCCAGGAAATTCAGAATGGAAACTTGTTTATGTCGATTATGAAAATGATGTGCTTCTAGTGGGAGACGATCCATGGGATGATTTTGTAAAATGTGTGCGATGCATAAGGATTTTATCGCCTTCGGAGGTAGAGCAAATGAGCGAAGAAGGATTACAGCTTATGAACAACTATCTTCCATCACGTTCAACTTGA

Protein

Gene

>g188978.t1
ATGTCATCTGTTCAAGGTCAAGTCAAAGCTATCAGTTCTTTCTCAATATTGGATGAAATGAGACTCTTAGGAGAAGCTGAGGCCAATCCAGGTTAGTGTTTTATGTTGTTGGTCGATCAAATGCTTGAATTTTTTTTCACCTATTTATGATTTTGTTTGTTCTAAGGTCCAAGAAAAGATATAAACTCTGAACTATGGCATGCTTGCGCTGGTCCTTTAGTTTCTCTACCTCAAATTGGAAGCCTTGTATATTATTTTCCTCAAGGACATAGTGAGCAGGTTCTAATTTTTTTACTTTTGTTGCACAAAACTTGTATTTTGTCTTCATTAACTGTTAAAAAACCTAAGTTAACTATGATCATTTTTTCATGGAACTTGCTGTGAGCATTTACTGTTTACATGAACATACAAGCGTCCAACACAATTAGCATTGAGTAAAGTTGATGCAATTTCACAAAAAAATTTATGCAATTAAATGACTGCATTTTCTCAAAGGTGACAGCATCAACAAGGAAAATATCAAATGCTCACATTCCAAACTACCCATCTCTGCCATCTCAATTATTGTGTCAGGTTCACAATGTAACACTGCACGTAAGTACCATTTGATGAAGTAATATTGGACTTAACCATTTATCTATACCATTAACTCAAAATTTTGCCTGTCTAACTGCTAGACTGACGGGGAAACTGACGAAATATATGCTCAAATGAGTCTCCAGCCAGTGAAATCTGTAAGTAAAAATTTACTTGTCATAGTACATGACATAACATTTTGAGGTTGATATTATTTTTGCGTACATCACGTAAGTTTCATAATCAGGATAAGTTAACAAAACCAGATATATATACATTTTACAAACTGTCTACGTATAATATAGTTCTATAATATTTCCTTATTCAGGATGCAGATGTCCTTCCGATTCCAAAATTTGGACAAATAACTATAAGCAAGCAACCAAGTGATTTTTTCTGCAAGATTTTGACTGCTAGTGATACAAGTACTCATGGTGGTTTTTCAGTGCCTCGTAGAGCTGCTGAAAAACTATTCCCTCAATTGGTAAGAATATATGTGATACAAATTCATAACTTGCGTATTCAAGGCAATCAAAGGTCAAGTTAATATACACGGTATCCATATTTTTCAGGATTATTCTATGCAACCTCCAAATCAAGAGCTAATTGTCAAAGACATACATGATAACATTTGGACATTTCGGCACATTTACAGAGGTTTCTACATACACATTGACTTGTTTTTCCCCCCTTTTTTTTAATCTCATGTTTGAATTCGTTTCTTTTGTTTGTCAGGGCAGCCAAAGAGACATCTTTTGACAACTGGTTGGAGTTCATTTGTGAGCATGAAACGACTTAAACTTGGTGATTCTGTTTTGTTCATCCGGTAATGCATGTGTACCAATTTGTTTTTTAATTTTGATTATCAACCGTCAATGATTGAACATAATAGTCAAACAAAGTTGAAAGGTGTAGTTCTGTATAGTTATATTCAAGAAGATAGAACAAAGCCATATATGTTTTAGAATGTTTTTATAGTGATGCTCTTGATCAATTTGAAGAGCAAGTACGCCTTGGATACTGTGTTGTGTTTTATTTTATTTTATTTATTTGTGATTTGCGTAGAGATGAGAAGTCCCAATTGCTGTTGGGAGTGAGACGAGCAAAGAAAGGTCAGCAGACCTCGTTGCCATCATCAGTGCTTTCTACAGACAGTATGCATATTGGAGTACTTGCAGCTGCAGCCCATGCCGCAGCTAGTAGAAGTCCTTTTACTATTTACTATAACCCAAGGTAAACATACTTCTTAAGTTTATGCTTAAGTTTTTCCTTCGTATATTATGCTGATATAATTTATTAATTTTTCCAGAGCATGTCCTTCAGACTTCATTGTTCCTTTGGCTAAATACCATAGAGCAGTATATGCTCAAGTGACAGTTGGGATGAGATTCGGAATGATGTTTGAAACCGAAGAATCAATTAAACGCAGGCACTAGAATGTTCTTTCTTTCTTCTTGAATGTTTTTTCTTCATATATTATGGTTTTTGCTCAAGTATCACAGTGTCATGAACTTCTTAACTGACCCAAGTCCAAGTTTATTGAAGTCCATAAACCTTAATTTTTTTTATTTATAAATCTTTAGGTTTATAATTACCCAATGCGGGAAACATATGGACATTCATACTAGATGACATGGAATATGCATGTTAATTAAGTTTAACACATTCAATGTTCATAAACCGTAAATTCATAACAGAATCTGCAGTTAATTTTAAAGTGTAGCAACTTCATGTATTCTAATAAGAGATGTTTGGTCACTGAATTCTTAATGTTAGGATAAGATTCAAAATTATCCTGGTTCTCTTTGTACCCTTTACTCTTTGTCGGCAGATTTGAGCATAATTGTTATCATATACTATTTCACGTATTATTTGCATTTTTGCATGCTAAAGTATGTCATGAGAAATGTGACTTTCTGAAATATTGCTTCTTAGAAATCGTGAAACGTTTTTTTCAGGTTGATGGGAACAATTGTAGGAATTAGTGATTTCGATGCATTAAGATGGCCAAACTCAAAGTGGCGAAATTTACAGGTGATCACCTCATCTAATGTTCTTTGCATCAGTTTAAATTTATGAATAAAACATACAACATAAAATCAATGATGAATGGTAAAAATAATGAATTATTAGGTGGAATGGGATGAACAAAGTTGTGGTGAAAGGCCAGATAGAGTTAGCATATGGGAAATTGAAACTCCTGAAAGTCTATTTGTTTTCCCCACTCCATGTTCTAAACGACAATGTCTTCCTGGATTTGTTGGTGAGTCTTACCATTATATTTTGCATATGTATACAAGTTGGGTTATTGCATTAATCTCACGGATTTGATGGTAAATAGCTACTTATGCATAGTTACACGCGCACACGCATATTATAATGATGATAATGATGATGAGGATGATGAAAGTGCATGAATAACATTGGTAAATAATATTTTCAAATGAAGTAATAGTTAATAATTTGTACACATGATTTTTGTATATCGTAAACAAAAAAAAACGTTTAAATGATCTATTGCACAAAATTTACAGGCAAGGCTGGTATAAAATGCACAAGTTTTTTTAGTCAAAGATCTTGTTCATCACATCAAATCTCGCTTTTTAGATTCACTATTACCGGATGCTGTGTATAACTGAATAATAATAGTAATAAAATTTATATGTTCTGCAGATTATATTATTTTCATGTTGTTTGTACTTCATGCAAATATTTAATCTTTTAAGGTAATTTACCTTTGCAACAGTTCCAAGTATGGAAATGGGATATGGGAACCCAAGACCATTTTCGCAGCTTCAAGAAAATACATCCGATATCATGCATCCATCAGTATCCAACGTTGCTTCAGACCAGCTGCTAAAAATGCTGCTTACACCACAGAATCAATTCTATAATAATCAGTTCAACTGTCATCAGTCAATGTATGCAAGCGCACTACAAACAAATCCATTAACACAACCAAATCATTTTGCCCCTTCACAAAATATTACCCTGCAATCTCAAAAAGGGAAGTGTAGCAAGGATAAAATTGAGACACATGTTGCTAATCAAGAACAAGTTAAAGAAGTTCAAAGTTGTGATTCTTCTTTATTTCAAGAACTGATTAAAAATCCAAACTTGGGGCATGATGAAGCGGAGCATGTGGAAAAAAACAACACCGTAAGCAGCACAAACCCTTCTAAGCAAGATCAGTCATCATGTTTTCAATCTCCTATGGATATTTTAAAAGAACCCTTATTTTCATTTAGCTCGAGTTTCCAAGATTACCCTTTACTATATTCTTCTGATAACGTTTCTAGCCCCTCAGCTGATATTTCTTCTATAGTGAATCGAGACATGTTAAACAATTTCGATTCATTTCAGCTGTCTAGCTACTCACCTTCGTGCATTCAAGAGTTTATTGGCTATCATGATCACGAATCGGATTTGCATAAAATAACCAATTCTTGTGCAGTGAAGAAAGACTCTTCTGAGAAGAGTATTAGCAATCATGAAACATCCAACAATTTACAAGTTGAAGCCAATAGTTCTTATGTGTCAAGTGCAATACTAGAAGAAATTAGTGATACGAAGAATACTAGTTTCTGTGCTCCTTCAGATGATTTGTTCAGTACTTTTTCCGATACCCAGTTGCAACCTCTTCTTGATATTCCAGAATGTTCTGCTGGTACGTCATCGGGAAGCATGGACATAAGTGAATGTAGTTTAGTAAGAAGGCGCTCCATGAAAAACGTGGCACAACAGCGTTTACGTACATATACGAAGGTGAAAAATATAATATGTTCATTTTATACTTTTGTTTTAGAGTTGTATGCGCTGACATGATTTGCATTGTAAAGGTGCAAAAGGCGGGATCTGTTGGCAGATCGATTGATGTGTCACGCTTCAAAGACTATAACGAACTAAAATATGCAATTGCATGCATGTTTGGGCTTGAAGGCAAGATTGATGATCCAGGAAATTCAGAATGGAAACTTGTTTATGTCGATTATGAAAATGATGTGCTTCTAGTGGGAGACGATCCATGGGAGTAAGTTGCTTCTAACCTTTTGTTCATGGAAATTTGCTTATGTGCCTATGCAAGGTTTTCAAGAGAAAATTTGAATCGTAAATTGTAAAGCTCAAAATTTAAATCGGAACAGGGTTCGTCATAAATTATATGTCCAAAAGATTAATTTAAATTAATTCACACACAAATGAATTGGGGCATGGAGTCGGGAAAAAGAAAAAAACGTTGAAGGGTTTCTCAGCACAAGATAATAAGTTTCTAGGATGACATTTCAGAATAATTAGTTTTAAGGAAAAAAGATAAAAGAAATTGTTATTTTATGTTTGATAATTATTATTTCCAAGTACAGAATAATTACTCTGAAGTGCCATCTTAGAAACTTATTACCATGAATTATGAAGCCCGTCAATTGAAAATCCTCAAATGAAAAATGTCCTAAGCCAGATTTAGTAAAAATAATAATATTTAGAGATTGATTTTTATGTTCGATTTTTGTTAGGATTTCATGGGATATAAAAAGAAAGGAGGGACGGGTATTAAGTTTTGTTTGATAGTATTTGATTACTTTTAGTTTATGGAAACACGCGTAATTTTGTATTTTGTATTATGCTGTACGTTAATATCCTTTTAATGTCTGATACATGCAATAGTTTCGAAAATTAATTGAAGGGTTATAACAACAAAAGTTGTTAAGATGAAAATTACGGATAAATTATCAAGAGTTGATCTTTTATTTTTTAAATACAGTTTGTGTTTTCCAAGAATATTCGAATAACTATTATATTTCAACCATGCCTCCCAATTAAAAAATGTAAGAGCAGCATTTTACTAAGTTTGATTTGATCATAAATAATCACTTTCAATTTTCTTTTCTTTGTTGTTTGGCTCAACAATCATACCCTCATGTTTCTACTTGTTGCTACTCAAGTTATTTATACCTAGTTTTATTTAGATGTTAGATAATATTTTTCCTTATGTAAATATCCAGTCTTCCAAAAATTGGATTATGTTTACTTGATGAAAAGGACTTGCCATCAAATTGAAATGCATTTGAGAGAATTATCAACTAGCAGTAACAATATAGTTTACTTGACATAAATCACGAGGAATTTGATGAAAGTCAGATAGGATAATGATACACACAATTTGACATATAAAAATATTCAAGCTACAGATCTAGTATTGTTCGTTTTTCCTCATTCTGTAAGCTTCATGACTTCCCAACTTATTTATTCTTTGTTAATTCAGTGATTTTGTAAAATGTGTGCGATGCATAAGGATTTTATCGCCTTCGGAGGTAGAGCAAATGAGCGAAGAAGGATTACAGCTTATGAACAACTATCTTCCATCACGTTCAACTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020273433.1	3.0e-275	auxin response factor 11
Swissprot	Q01K26.2	5.8e-223	OsMP
trEMBL	A0A6I9S724	1.1e-258	Auxin response factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G19850.1	49.27	0.0	768	ARF5;IAA24;MP	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g188978	AT1G19850.1	893	342	20	15	829	32	891	49.27	0.0	768
g188978	AT5G20730.2	358	102	6	31	384	16	368	68.99	1e-139	494
g188978	AT5G20730.2	96	32	0	728	823	1034	1129	66.67	2e-36	151

Ortholog group

Species	Genes
Allium cepa	g188978.t1
Allium fistulosum	AfisC4G01897
Allium sativum	Asa4G01631.1
Arabidopsis thaliana	AT1G19850.1
Oryza sativa	LOC_Os04g56850.1; LOC_Os04g56850.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02362.18	B3	Family	143	244	73.5	9e-21
PF06507.10	Auxin_resp	Family	270	352	115.0	1.3e-33
PF02309.13	AUX_IAA	Family	724	817	34.5	1.7e-08

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005515	F	protein binding
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0000578	P	embryonic axis specification
GO:0001067	F	regulatory region nucleic acid binding
GO:0003002	P	regionalization
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0016020	C	membrane
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0009790	P	embryo development
GO:0009880	P	embryonic pattern specification
GO:0007389	P	pattern specification process
GO:0009888	P	tissue development
GO:0008150	P	biological_process
GO:0042802	F	identical protein binding
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009733	P	response to auxin
GO:0009791	P	post-embryonic development
GO:0009793	P	embryo development ending in seed dormancy
GO:0009798	P	axis specification
GO:0009889	P	regulation of biosynthetic process
GO:0009908	P	flower development
GO:0009942	P	longitudinal axis specification
GO:0010033	P	response to organic substance
GO:0010051	P	xylem and phloem pattern formation
GO:0010154	P	fruit development
GO:0010305	P	leaf vascular tissue pattern formation
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022414	P	reproductive process
GO:0022622	P	root system development
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0042221	P	response to chemical
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048316	P	seed development
GO:0048364	P	root development
GO:0048367	P	shoot system development
GO:0048507	P	meristem development
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0090567	P	reproductive shoot system development
GO:0097159	F	organic cyclic compound binding
GO:0099402	P	plant organ development
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14486	K14486, ARF; auxin response factor	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network