result

Gene information

Detail information of g191233

Location

Gene	Chr	Start	End	Strand
g191233	Scaffold_49788:HRSCAF_432874	134819	137122	+

Sequences

CDS

>g191233.t1
ATGAAAACCAAAATCAAACCTTTGTTCTCTTTCCTCCTCCTCCTCCACATCACCGTCGGAAAATCCCAAATCCTAATCATCAACGCCACCACAAAACCAATCCTCAGTGAGAAACAAACCTTCGCCCTCGGATTCTTCAACCTCAACTCGAACTCATCCCACTACTTGGGCATCTGGTACGCCTCCATCCCCATCCGTACCTACGTCTGGGTCGCCAACCGCCGATCCCCAATTCCATCCCCTGGAAAACTATCCCTAACCCCTTCCGGCCATCTTTCCATCATATCCGACCCCAATACCACAATCTGGACTTCCGAAAACACCCTTCCTGCAACCACCTTCAAACTTCTCGACACCGGAAACCTAATCCTTCTCAGCTCTGAAAACGTCGTCGTATGGCAGAGCTTCGACTTCCCGACCGACACATGGCTTCCTAACATGACGGTGACGAATTCGATGAAGTTGGTCTCCTGGAAATCCCCAACCGATCCGTCACTTGGAAACTACATCTTTAGGCTCCGACCACCGGAGTACGGCGAGTTCGAGCTCGTCTTCAATGACTCCGTCAAGTACTGGTCCACCGGAAACTGGATAGGGAACAGGTTCACCAATGTGCCGGAAATGACGATCCCGTACATCTACAATTTCCAGTTTCTGAATCCCTTCACCCCTGACGCCAGTTTTATATACTCCCAGAACACAAACGACAACATGAACGGGAAAATGCTGACCAGGTTCGTTCTAGACTCTTCTGGTCAGGTGATGCAGTACACATGGTCAGAGCAGTCCTCCAGTTGGAACATGTTTTGGTCAAGGCCTGAAAGCCCGTGTAAGGTTTACGGGCGGTGCGGGAAGTTAGGGTTCTGCTCAACCGGGCTCAGCCCGTGTGAATGCATTGGTGGGACCCACCCCATGGACTATGACAGCTGGAATTCCGGCGACTTTTCTTGTGGGTGTGAGCATGGGTTCGGTGGCGATGATGTTTTCATCGATGTCGGAAAGTTTGATTTTGATGGAGTTGTGATGAAGTCGGTTCTTGATATTGATTTCAATGGTTGCAAGGGTGTTTGTCGGGGTACTAGTTCTTGTTTCGGTATCAGATATGAGTTTCAGAACCAACACTGCGTCGCCCTTTACGGAGACGCAATGAATTTGAGAAATAGCACCACTTCACCGGTTCTCTATCTCCGTGTTACAAAACCGTCTAGCAAGAAAAAACTTGGAAAGTCAAGTATCATGTTAATCGCAATTGGGGTTTCATTGATTTGTACGATTCTAACCGCTTCAACCGTGATCATAGTTCGAAGAAGCAGAAGAAGCAAAGAACTCAAAAGTAAGGTTCGAAAACGCGACGAGGAAGACGGTATGAACCTCCGCGTGTTCACGTACAAAGAACTCTCCTCGGCAACCAATAACTTCGTGGAAAAACTTGGGCACGGAGGGTTCGGCGCAGTGTTCCTCGGTAAACTACCAGACTCCACCGCCATCGCAGTTAAACGGCTCGAGCGTCCAAACGGCGGTGACCGCGAGTTCCGCGCCGAGATCAAAACCATCGGCAACGTCCACCATGTGAACCTCGTCCGCCTCCGTGGGTTTTGCTCCGAGGACCCGCACCGGATGTTGGTCTATGAGTACGTCCAAAACGGGCCTTTGAGCGCTTACTTGATCCATGATCGAACAGCGTTGAGCTGGAGGGTGAGGATGGAGATAGCGGTGGGGGTGGCGAAGGCAGTGGCTTATTTACATGAAGAGTGCAGGGAGTGTATAATACATTGTGATATAAAGCCGGAGAATATACTACTGGGGGAAGGGTTTGGGCCTAAGTTATCGGATTTTGGGCTGGCGAAGCTGGTGGGCCGGGAGTTCAGCCGGGTGCAAGCGAGTGTGAGAGGGACGTGGGGATACGTGGCGCCCGAATGGGTTTCGGGAGCGGCCATTACTGCGAAAGCAGATGTGTACAGCTATGGGATGACGTTAATGGAGATTTTGAGGGGGAGGAGGAACGTGAGGAGCATGGAGGAGACGTGGTTCTGGCCGCCATTGGCGGCGAGGAAGGTGGTGGAGGGGGACGTGGCAGCAGTGGTGGATCCGGAGCTGGGGTCGGAGTGGGTGTTTGCGGAGGCAGAGAGGGCGGCGCAGGTGGCTGTTTGGTGCGTTCAGGACGAGGAAGGGATGAGGCCAAGCATGGGGACGGTGGTCAAAATGCTGGAGGGCACCGTGGCGGTGACGGCGCCGCCAATGCCGATGTTGTTGGAGAAGATGGTGGAGGGAGATTCGTTTGGACGAGTGGGGTCGAACAGCTGA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020698526.1	2.1e-238	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2
Swissprot	Q39203.1	2.1e-203	S-domain-2 (SD2) receptor kinase 2
trEMBL	A0A2I0VTF8	1.5e-238	Receptor-like serine/threonine-protein kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G00340.1	50.52	0.0	720	RLK4	receptor-like protein kinase 4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g191233	AT4G00340.1	776	346	14	23	767	22	790	50.52	0.0	720
g191233	AT2G19130.1	798	414	21	8	758	7	788	40.23	3e-156	549
g191233	AT1G65800.1	788	434	27	29	748	39	811	34.39	7e-108	388

Ortholog group

Species	Genes
Allium cepa	g191233.t1
Allium fistulosum	AfisC2G00130
Allium sativum	Asa5G00212.1
Arabidopsis thaliana	AT4G00340.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF01453.21	B_lectin	Domain	66	160	80.8	5.8e-23
PF00954.17	S_locus_glycop	Domain	192	304	83.1	1.8e-23
PF00069.22	Pkinase	Domain	474	733	154.3	3.5e-45

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0005488	F	binding
GO:0005516	F	calmodulin binding
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019538	P	protein metabolic process
GO:0036211	P	protein modification process
GO:0043170	P	macromolecule metabolic process
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0071704	P	organic substance metabolic process
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network