result

Gene information

Detail information of g193735


Location
GeneChrStartEndStrand
g193735CHR6119488816119505589+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020268550.11.7e-267homeobox-DDT domain protein RLT2 isoform X2
SwissprotF4HY56.11.9e-207Protein RINGLET 1
trEMBLA0A5P1ES963.5e-267Homeobox-DDT domain protein RLT1

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT5G44180.142.190.0 902RLT2Homeodomain-like transcriptional regulator

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag193735.t1; g221464.t1
Allium fistulosumAfisC5G02224; AfisC6G04091
Allium sativumAsa4G05788.1; Asa7G04178.1; Asa8G02978.1; Asa8G02979.1
Arabidopsis thalianaAT1G28420.1
Oryza sativaLOC_Os05g48820.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00046.26HomeoboxDomain12918561.64.2e-17
PF02791.14DDTFamily55460756.22.9e-15
PF05066.10HARE-HTHFamily72879557.41.2e-15
PF15612.3WHIM1Family91295534.59.2e-09
PF15613.3WSDFamily1038111047.71.5e-12

Gene Ontology
AccessionOntologyName
GO:0000003Preproduction
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000976Ftranscription regulatory region sequence-specific DNA binding
GO:0000977FRNA polymerase II regulatory region sequence-specific DNA binding
GO:0000978FRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000981FRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0000982Ftranscription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0000987Fcore promoter proximal region sequence-specific DNA binding
GO:0001012FRNA polymerase II regulatory region DNA binding
GO:0001067Fregulatory region nucleic acid binding
GO:0001077Ftranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0001228Ftranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0001525Pangiogenesis
GO:0008152Pmetabolic process
GO:0001568Pblood vessel development
GO:0001944Pvasculature development
GO:0003006Pdevelopmental process involved in reproduction
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003690Fdouble-stranded DNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0006366Ptranscription from RNA polymerase II promoter
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006139Pnucleobase-containing compound metabolic process
GO:0006351Ptranscription, DNA-templated
GO:0006355Pregulation of transcription, DNA-templated
GO:0006357Pregulation of transcription from RNA polymerase II promoter
GO:0006725Pcellular aromatic compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0007275Pmulticellular organism development
GO:0009653Panatomical structure morphogenesis
GO:0008150Pbiological_process
GO:0009058Pbiosynthetic process
GO:0009059Pmacromolecule biosynthetic process
GO:0009791Ppost-embryonic development
GO:0009889Pregulation of biosynthetic process
GO:0009890Pnegative regulation of biosynthetic process
GO:0009891Ppositive regulation of biosynthetic process
GO:0009892Pnegative regulation of metabolic process
GO:0009893Ppositive regulation of metabolic process
GO:0009987Pcellular process
GO:0010228Pvegetative to reproductive phase transition of meristem
GO:0010467Pgene expression
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010557Ppositive regulation of macromolecule biosynthetic process
GO:0010558Pnegative regulation of macromolecule biosynthetic process
GO:0010604Ppositive regulation of macromolecule metabolic process
GO:0010605Pnegative regulation of macromolecule metabolic process
GO:0010628Ppositive regulation of gene expression
GO:0010629Pnegative regulation of gene expression
GO:0044212Ftranscription regulatory region DNA binding
GO:0048646Panatomical structure formation involved in morphogenesis
GO:0016070PRNA metabolic process
GO:0045935Ppositive regulation of nucleobase-containing compound metabolic process
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0045892Pnegative regulation of transcription, DNA-templated
GO:0018130Pheterocycle biosynthetic process
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0019438Paromatic compound biosynthetic process
GO:0022414Preproductive process
GO:0031323Pregulation of cellular metabolic process
GO:0031324Pnegative regulation of cellular metabolic process
GO:0031325Ppositive regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031327Pnegative regulation of cellular biosynthetic process
GO:0031328Ppositive regulation of cellular biosynthetic process
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0032774PRNA biosynthetic process
GO:0034641Pcellular nitrogen compound metabolic process
GO:0034645Pcellular macromolecule biosynthetic process
GO:0034654Pnucleobase-containing compound biosynthetic process
GO:0035239Ptube morphogenesis
GO:0035295Ptube development
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043565Fsequence-specific DNA binding
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044249Pcellular biosynthetic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044271Pcellular nitrogen compound biosynthetic process
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0045934Pnegative regulation of nucleobase-containing compound metabolic process
GO:0045944Ppositive regulation of transcription from RNA polymerase II promoter
GO:0046483Pheterocycle metabolic process
GO:0048514Pblood vessel morphogenesis
GO:0048518Ppositive regulation of biological process
GO:0048519Pnegative regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0048523Pnegative regulation of cellular process
GO:0048608Preproductive structure development
GO:0048731Psystem development
GO:0048856Panatomical structure development
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051172Pnegative regulation of nitrogen compound metabolic process
GO:0051173Ppositive regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051253Pnegative regulation of RNA metabolic process
GO:0051254Ppositive regulation of RNA metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0061458Preproductive system development
GO:0065007Pbiological regulation
GO:0071704Porganic substance metabolic process
GO:0072358Pcardiovascular system development
GO:0072359Pcirculatory system development
GO:0080090Pregulation of primary metabolic process
GO:0090304Pnucleic acid metabolic process
GO:0097159Forganic cyclic compound binding
GO:0097659Pnucleic acid-templated transcription
GO:1901360Porganic cyclic compound metabolic process
GO:1901362Porganic cyclic compound biosynthetic process
GO:1901363Fheterocyclic compound binding
GO:1901576Porganic substance biosynthetic process
GO:1902679Pnegative regulation of RNA biosynthetic process
GO:1902680Ppositive regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903507Pnegative regulation of nucleic acid-templated transcription
GO:1903508Ppositive regulation of nucleic acid-templated transcription
GO:1990837Fsequence-specific double-stranded DNA binding
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000113Pnegative regulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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