result

Gene information

Detail information of g194343

Location

Gene	Chr	Start	End	Strand
g194343	Scaffold_50206:HRSCAF_433292	102870	104716	+

Sequences

CDS

>g194343.t1
ATGGATACATTATTCAGGTTAGTCAGCCTCCAATCTTCAGACCATCAACAGCAGTCCAACTCCAGCTTCAACTCCAGCCGTACTTCAACGACCAGCTCCAAATCCTTGAAACAAAATCATTACCATCGCCGCCATAGCAATAACTACAACCATCACTTCCAAACTTACTCCTCCCAAGAAGAAGTAGACCAAGAAGAAGAATGCTTCAACACCACCAACCAAGTTTACATGGATGAAGACTTCTCCTCCTCCTCTTCAAACCCTAACTCTAGTACCCCCACCTTCTCCATCCCTCAAAACCCAAATCTCCCCGAACTCCTTCTCGAATGCTCCCGCGCCTTCTCCACCCACGACACCCCTCGTATCCAACACCTCATGTGGATGATCAACGAGCTCTCCTCCCCTTACGGCGACCCCGACCAGAAGCTCGCTTCCTACTTCCTCCAAGCCTTTTTCGCCAAACTCTCCAACTCAGGCCCTCGCACCCTCCAAACCCTCTCCTCCGCCTCCGAGAAAACCATGTCCTTCGACTCAACCCGTCGAATCGCCCTAAAGTTCCAAGAGCTCAGTCCCTGGTCCTCCTTTGGCCATGTGGCCTCCAACGGTGCCATCCTCGAAGCCTTCCTCGAACCCGATTCTTTAAACCGTCCGCTCCACATAATAGACGTGAGCAACACGTTCTGCACGCAGTGGCCGACGCTGCTGGAGGCGCTGGCGACGAGGTCCACTGAGGACACGCCTCACCTGACGGTGACCACAGTGGTGACTTCGTGCACGCAGAGGGTGATGAAGGAGATCGCATCCAGGATGGAGAAGTTCGCCAGGCTCATGGGGGTCCCCTTCCGGTTCAACGTGGTGCGCCATTCTGGGGACCTGTCCACGCTCGACCTGGACCGGCTGCACGTCGACCCTTCCGCGACCACAGCGATCAACCTGGTCAACGCGCTCCGTACAGTCTCGCCGGCCGGGGGCAGACGCGATGTTTTTCTGTCTGCGCTCCGCGGACTTCAGCCCAAGATCGTGACGGTGGTGGAGGAGCATGCGGATTTATCAGACTTGGGGGAGGAGATAAGGTGGTTTGGCGATGCGGTGAGGTTTTACGCTGCATATTTTGATTCGTTGGAGGAAAGCTTTGGGAAAACGAGCAATGAGAGGCTGGCGCTGGAGAGGCAGGCTGGGAGGGGCATGGTGGACTTAGTGGCATGCCCTACGGAAGGGTCGAGGGAGAGGAGGGAGACGGGGAGAGGGTGGGCCAGGAGGATGGGGATGGCAGGATTTAGGGCAGCAGGGTTCAGTGATGACGTGGCCGATGACGTGAGGGCGTTGCTGAGGAGGTATAGGGAAGGGTGGGGGATGAGAGGGGCGGAGGCCGGGAACGAAGGAGGGCGCTTGGAGGCTGTAAGTTTGAATATTTGGCACGTGCCGGAATGTGCGCTTGTCACCGCATGTACCCTATTGGCTACTGCAATATACAATCTTTTGATGTGGTCACAACGAAGACAGATTTTTTTTTCCCCCCTCCTCTTTTCTTCTTCTTTTTTGACTATTTAG

Protein

Gene

>g194343.t1
ATGGATACATTATTCAGGTTAGTCAGCCTCCAATCTTCAGACCATCAACAGCAGTCCAACTCCAGCTTCAACTCCAGCCGTACTTCAACGACCAGCTCCAAATCCTTGAAACAAAATCATTACCATCGCCGCCATAGCAATAACTACAACCATCACTTCCAAACTTACTCCTCCCAAGAAGAAGTAGACCAAGAAGAAGAATGCTTCAACACCACCAACCAAGTTTACATGGATGAAGACTTCTCCTCCTCCTCTTCAAACCCTAACTCTAGTACCCCCACCTTCTCCATCCCTCAAAACCCAAATCTCCCCGAACTCCTTCTCGAATGCTCCCGCGCCTTCTCCACCCACGACACCCCTCGTATCCAACACCTCATGTGGATGATCAACGAGCTCTCCTCCCCTTACGGCGACCCCGACCAGAAGCTCGCTTCCTACTTCCTCCAAGCCTTTTTCGCCAAACTCTCCAACTCAGGCCCTCGCACCCTCCAAACCCTCTCCTCCGCCTCCGAGAAAACCATGTCCTTCGACTCAACCCGTCGAATCGCCCTAAAGTTCCAAGAGCTCAGTCCCTGGTCCTCCTTTGGCCATGTGGCCTCCAACGGTGCCATCCTCGAAGCCTTCCTCGAACCCGATTCTTTAAACCGTCCGCTCCACATAATAGACGTGAGCAACACGTTCTGCACGCAGTGGCCGACGCTGCTGGAGGCGCTGGCGACGAGGTCCACTGAGGACACGCCTCACCTGACGGTGACCACAGTGGTGACTTCGTGCACGCAGAGGGTGATGAAGGAGATCGCATCCAGGATGGAGAAGTTCGCCAGGCTCATGGGGGTCCCCTTCCGGTTCAACGTGGTGCGCCATTCTGGGGACCTGTCCACGCTCGACCTGGACCGGCTGCACGTCGACCCTTCCGCGACCACAGCGATCAACCTGGTCAACGCGCTCCGTACAGTCTCGCCGGCCGGGGGCAGACGCGATGTTTTTCTGTCTGCGCTCCGCGGACTTCAGCCCAAGATCGTGACGGTGGTGGAGGAGCATGCGGATTTATCAGACTTGGGGGAGGAGATAAGGTGGTTTGGCGATGCGGTGAGGTTTTACGCTGCATATTTTGATTCGTTGGAGGAAAGCTTTGGGAAAACGAGCAATGAGAGGCTGGCGCTGGAGAGGCAGGCTGGGAGGGGCATGGTGGACTTAGTGGCATGCCCTACGGAAGGGTCGAGGGAGAGGAGGGAGACGGGGAGAGGGTGGGCCAGGAGGATGGGGATGGCAGGATTTAGGGCAGCAGGGTTCAGTGATGACGTGGCCGATGACGTGAGGGCGTTGCTGAGGAGGTATAGGGAAGGGTGGGGGATGAGAGGGGCGGAGGCCGGGAACGAAGGAGGGGTGTTTTTGGAATGGAAGGAGCAGCCCGTTGTCTGGGCCAGCGCTTGGAGGCTGTAAGTTTGAATATTTGGCACGTGCCGGAATGTAAGTGCCGAATATTTTTAGATTGATTTTCTTACAAAATATTTTGATGACGGCTGTTATTCTCTGCTTCATTGCCTGTTTATTTATTTTTTAGGTTTTTCCCACTCTTCTTTATTTTTTCTGCATTTAATTTTGCTTTAGCGTGTTATATACATGAGGCTCATGGATATAAGATTCTTTGCGTATATTCATTTATTTTATATTATGCTTATGCAACATTAGTTAGAAAAATAAGATTTGCCATTTTGATTGTAGGTGCGCTTGTCACCGCATGTACCCTATTGGCTACTGCAATATACAATCTTTTGATGTGGTCACAACGAAGACAGATTTTTTTTTCCCCCCTCCTCTTTTCTTCTTCTTTTTTGACTATTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010938978.1	2.0e-128	protein SHORT-ROOT 1-like
Swissprot	Q8H2X8.2	6.5e-124	GRAS family protein 38
trEMBL	A0A8K0I910	1.0e-129	Protein SHORT-ROOT 1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G37650.1	47.36	2e-114	410	SGR7;SHR	GRAS family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g194343	AT4G37650.1	511	203	11	1	452	1	504	47.36	2e-114	410
g194343	AT3G49950.1	371	220	12	103	453	27	384	31.81	9e-37	151
g194343	AT2G04890.1	357	234	9	102	452	49	390	28.57	4e-35	146

Ortholog group

Species	Genes
Allium cepa	g194343.t1; g353363.t1
Allium fistulosum	AfisC2G06055; AfisC4G05626
Allium sativum	Asa5G04646.1; Asa6G03543.1
Arabidopsis thaliana	AT4G37650.1
Oryza sativa	LOC_Os03g31880.1; LOC_Os07g39820.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	105	457	283.0	2.9e-84

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003002	P	regionalization
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0051726	P	regulation of cell cycle
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0007346	P	regulation of mitotic cell cycle
GO:0007389	P	pattern specification process
GO:0008150	P	biological_process
GO:0008356	P	asymmetric cell division
GO:0009889	P	regulation of biosynthetic process
GO:0009956	P	radial pattern formation
GO:0009987	P	cellular process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010817	P	regulation of hormone levels
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032350	P	regulation of hormone metabolic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0042592	P	homeostatic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043565	F	sequence-specific DNA binding
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0045786	P	negative regulation of cell cycle
GO:0045930	P	negative regulation of mitotic cell cycle
GO:0050801	P	ion homeostasis
GO:0048366	P	leaf development
GO:0048367	P	shoot system development
GO:0048519	P	negative regulation of biological process
GO:0048523	P	negative regulation of cellular process
GO:0048731	P	system development
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0048878	P	chemical homeostasis
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051301	P	cell division
GO:0055065	P	metal ion homeostasis
GO:0055072	P	iron ion homeostasis
GO:0055076	P	transition metal ion homeostasis
GO:0055080	P	cation homeostasis
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0065008	P	regulation of biological quality
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:0098771	P	inorganic ion homeostasis
GO:0099402	P	plant organ development
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network