result

Gene information

Detail information of g195028

Location

Gene	Chr	Start	End	Strand
g195028	Scaffold_50304:HRSCAF_433390	303551	307363	-

Sequences

CDS

Protein

Gene

>g195028.t1
ATGACATTTTGCTTCATCCAAGCCATAGAAAGAGGACATGGAAGTACATATGGAAGCATACTCAATTCTATGAGATCAACTGTTAGAAGCACCGGTGAACCTATGGGTGGTGGTCCTATTACTTCGCTTTTGACCATGCTCTTGAGTGGTGGCAGTGGAGATGGTGGTTTGGGACATGTATTTATTTTCATTATCCATTGTATTAACATGGTAAATTGACTTATTAATGTTATAGAACATGAACTTGATAGAATATAAAATTTCAACCTTTTTGAACAAATCATAGAAATATGCAAGTTTCAACTAATGAACTGCTTAATGTCATAATGTGTCCATTATACACTTTTAGACGTTAATTATTCGGCAACATTTGCACATAAAAATGTTTCATCGTATATGCTACAATAGGTTAGATAATAATTGAATAAAAACAACATACACGCATAGTGACCTCCATCACTGAAAATTAATGCATATAATATAAATCTAAAAACAGTGGATGATCTTTTTTTGCTAATGGTTACATTATTGGCGTACGGCCAAATGTCTGAGACTTTTGCATATATATGCGGAACCACATTTGACCTCATGCAAACCATTAGATGTATACATTAATCCATTTTCTCTCTAATATGAAATTAATCATCAATTGATGTCTTTACATTATCTGATTATCATTGAAGTGGTTTCCACATCATGGCCAATTACAAGTTGCTGCCTATTTGTGGATGTGTTTTCAATATTTATGGATCATTATAGTTTATAAATTTTTTATTGTATGACCACTTTAGTTGTAAATAGTATATTTTGATTATTTACCAGAACAATTTAAATTTATACCTGCAACAATTTTATTTTTCCGTACCCGTTTGCGAAGCATGTGTTCACACTAGTTCACCATAACAATATATGACTTCATGCCAAATTTCAATTATAGTGACACTAAACTTTTGTGTCGAATGAGATGAACCATCTCTGGAGTAATGTTTTACTTTAAGAGTCTTAACACATAGCTTACTATGGACAAAACATGATCCATTTAGCATGTTTTTCCATAATTAAAGTACAGTCTCAATGCATAAGATTCACAATACTCTCAAGTCGAAAGAGCACAACTATATGTCATCACATGAGATTTTCTATTTGACTAAAATATAATAATATAGAGAAGACTCTTGATGACTCATTCTGTCTTTCCAAATAACTACAAGTATGTAATTTATTGGACCCCCAATAATCATGAGAAAATAAGTGTCCATCATATGAATAGTGTTACATATATTAATCTTGTCAATATATCAGAGTACCTTTTTCTCAAAATAAATAATAACTAGGAACACTTAAGGATAAGTGTTTGTTAGTATGATACACTATTCATGGTTTAAAACTCTTTTATAACTGCCATTGACTAAACATGTCGTCCTACAGATTTATTTTCATTTGTAATCATGTACTCAAATCATTATGCACATGCATATAACATAAATAAAGACCAAAAGCATACCTTAATTACAAACAGTATTCTTTACAAGATTAAAATTATATAACCAAATTACATAATTATCCAAAGATTGTGCTTTTAACTCTATCAAGTATTGCATTTTGGGCCAACTATAATGTTCCAAAACCATAATTTGATAAATCTTCCTAGATTAGATTGAGAAAGGGGGCATAGTTGGTGAATCTATAATATTATATTTCATATCTGCTTGTTCAAATGACCACTACTCCAGGGATAATTAGTTCTATCATGTGGTAAATGTGGACAAGATGTTTCAATCCTTAACAAGTTATAAGCGCCATTGCGATTTAACAGAATCATTATGGTAATAATGCACGGGTATTGGGTTTTTGATGGTTAGAATCTTTCATAGCTCACTTATAAATTTGTATGTTCACACTTCAACCTTTGTGGCATGATCAAGGCAATTTGCTCAACCTTATAGTTGAATATTTCGCAACTTATTGTTGCAACCTTTCCAACTCATGACCCCTCTATTAAGATTGAACATGAAAGTCTAGATGGATTTAATTTCATCAACATCCTTATGATAACATGAATCAAAACATTCCTTCATAAGGATTTTGTTTTTTCTATGTAGTAGAAATAATTTTACAGTACTTTGTAAATACTTGAGAATGCTCATAATAGTTGTCTAGTTTTTTCATCTTGGATTAGACTATAATATACTTACTGCATCGAGTGCATAAGCGATATTGGATCTATTGCGACATAGTTGTTTCTCGTTTTTCTCACAAAAGTATAGGTGGGCTCGTCAAACCTAATGCCAAACAACAAAGTCTCGCATAGCGCTTGTTGACCACTATCTTCCCCAGCCCAATGGCATGTACAATCATTCCACCTTAACCGCAAGGTGTAATTGCCCCATCATCCTTGCTTAAGGTCTTGCCCGCTATGATTCCAACAACAATAACGAGTCCAAAGCCTTGTAGATAACACATGCCCTCCAACCCTCGTACATCCCCTAACCCTACCCTTTGGTGACCAGGCAACAAAATGACAAGGCAACAAGACAACAACAATGATGGGTTCTATCCGATCGTTAAAGAATCCTTGTCGGTCAACATCATATCCTCCCTATTCTATCATGACTAAGCAGAATTTTGATGAAAGATCATGTTTGCGCCCACAAAAAGATGGGACGGACCCGTATTGCTCCTTTAACAAAAGCCTCATTGTATAACAACTAATCTCAATACTTAATGTTCCATCTAGAAAAGCATAATGTACTATAGACACTTCTTGATCTATGTTTCTCACCTGAAACAAGCATGCCCAATATAGCTCGCCAGCCAGCACACATCTGAACCATCTCTCCTTACAGAATCTGAGTTGGTCGCATAACCGTATATTACAATAAACGATATCAATTAAACTTAACATCCAAGCGGTAATCTCAACCCTTTGAAGTATGAAAAGATGTTCAGAGATGCTTTTACAAGGATCAAATTTTCTACTTTCAAGAGATTTATTTTCCAACTCTAAGCTCTTATAATATTTTTTAAATTTCTTTTTATAACCAAAAGACTCAAATTAATAAAAACATTAACTATTGTGGACGTGGATCTTTGTGAAGCTCAAACCGCTCTACATTTTGTGTCATTTACCTAAATTGTACTACTTATTATACATTTAATTTGTAACTATCCACACCCCAGTGGGCCTAATGTTCTGCTAAATCGAAAACCCAAGTCCACCAAAGTACAGATCATTTGTTGGTATCCTTCAAATAAAGCAATAAATGTATACCGGAGTGCTAACAATATAAGTCACAACAGAATAAATAAAATATAATAAATCATGTAACTACCGACCAATAATTTACACTTCCAAGATCTAGTGTCCGTATCAACACTGAATACGTAGAGTACCAGTACCTGTCCTTCAAGATATCCCGTGGGTTGTAATAAGGAAAGGGTTGATACAATGTTCTGGTGACTGGCAAATTATATACTTTATACATAATACTAGTTTATACCGAATTTTCTCTATCTTATGTCATGTCCTTTAATATTTAATTAGTCGTTTTGACTCCATGTCCACGTATGATACGTTCCATTTACCCATGGTAGGTTATAACTACGTACATACATAAATATAAGTACTACGATCCCCCGTTGAACCTAAATACTATCCCCGTTGATATCTCTCTATCAGTACCTCCGTTAGGCTCCATCGTCGTCGGCACCCCTCCAGGCTCCATCGCCCTCGCCATATCACAATCTCATCGCTGCGCATATCGAGGGACTCCCGTAGTGCCTAGTGATGGTTTTTTAAATATTTTGCCGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_009388277.1	6.2e-18	PREDICTED: metacaspase-1
Swissprot	Q7XJE5.1	1.8e-06	Metacaspase 1c
trEMBL	A0A804I4S4	4.5e-18	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G02170.1	49.38	6e-10	59.3	ATMC1;AtMCP1b;ATMCPB1;LOL3;MC1;MCP1b	metacaspase 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g195028	AT1G02170.1	81	37	3	1	77	287	367	49.38	6e-10	59.3
g195028	AT4G25110.1	28	5	0	1	28	323	350	82.14	1e-07	51.6
g195028	AT4G25110.2	28	5	0	1	28	322	349	82.14	1e-07	51.6

Ortholog group

Species	Genes
Allium cepa	g195028.t1
Allium fistulosum	AfisC2G04755; AfisC7G00358
Allium sativum	Asa0G05297.1; Asa1G04436.1; Asa7G07659.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
-	-	-	-	-	-	-

Gene Ontology

Accession	Ontology	Name
GO:0004197	F	cysteine-type endopeptidase activity
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003824	F	catalytic activity
GO:0004175	F	endopeptidase activity
GO:0008234	F	cysteine-type peptidase activity
GO:0008233	F	peptidase activity
GO:0006508	P	proteolysis
GO:0006807	P	nitrogen compound metabolic process
GO:0008150	P	biological_process
GO:0070011	F	peptidase activity, acting on L-amino acid peptides
GO:0010941	P	regulation of cell death
GO:0010942	P	positive regulation of cell death
GO:0016787	F	hydrolase activity
GO:0019538	P	protein metabolic process
GO:0043067	P	regulation of programmed cell death
GO:0043068	P	positive regulation of programmed cell death
GO:0043170	P	macromolecule metabolic process
GO:0044238	P	primary metabolic process
GO:0048518	P	positive regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network