result

Gene information

Detail information of g195354

Location

Gene	Chr	Start	End	Strand
g195354	Scaffold_50344:HRSCAF_433430	518784	519628	-

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010940077.1	1.7e-25	protein RADIALIS-like 3 isoform X1
Swissprot	F4JVB8.1	7.5e-23	Protein RADIALIS-LIKE SANT/MYB 2
trEMBL	A0A6I9SAL6	1.2e-25	protein RADIALIS-like 3 isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G75250.1	55.56	1e-25	111	ATRL6;RL6;RSM3	RAD-like 6

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g195354	AT1G75250.1	90	36	1	1	86	1	90	55.56	1e-25	111
g195354	AT1G75250.2	90	36	1	1	86	1	90	55.56	2e-25	110
g195354	AT4G39250.1	86	36	1	8	92	14	99	56.98	3e-25	109

Ortholog group

Species	Genes
Allium cepa	g195354.t1; g20742.t1
Allium fistulosum	AfisC5G01769; AfisC5G01925; AfisC5G05648
Allium sativum	Asa4G01725.1; Asa4G03433.1; Asa4G03434.1; Asa4G05707.1; Asa5G00207.1; Asa8G03239.1; Asa8G03240.1; Asa8G03241.1
Arabidopsis thaliana	AT1G75250.2; AT2G18328.1; AT2G21650.1; AT4G39250.1
Oryza sativa	LOC_Os01g44390.1; LOC_Os01g44390.2; LOC_Os05g50340.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	7	53	31.5	1.4e-07

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0016021	C	integral component of membrane
GO:0002791	P	regulation of peptide secretion
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006457	P	protein folding
GO:0051087	F	chaperone binding
GO:0016020	C	membrane
GO:0005783	C	endoplasmic reticulum
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005635	C	nuclear envelope
GO:0005737	C	cytoplasm
GO:0005788	C	endoplasmic reticulum lumen
GO:0005789	C	endoplasmic reticulum membrane
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006417	P	regulation of translation
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0009987	P	cellular process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010608	P	posttranscriptional regulation of gene expression
GO:0012505	C	endomembrane system
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031090	C	organelle membrane
GO:0031224	C	intrinsic component of membrane
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031965	C	nuclear membrane
GO:0031967	C	organelle envelope
GO:0031974	C	membrane-enclosed lumen
GO:0031975	C	envelope
GO:0031984	C	organelle subcompartment
GO:0032268	P	regulation of cellular protein metabolic process
GO:0032879	P	regulation of localization
GO:0032880	P	regulation of protein localization
GO:0034248	P	regulation of cellular amide metabolic process
GO:0042175	C	nuclear outer membrane-endoplasmic reticulum membrane network
GO:0043021	F	ribonucleoprotein complex binding
GO:0043022	F	ribosome binding
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043233	C	organelle lumen
GO:0044422	C	organelle part
GO:0044424	C	intracellular part
GO:0044425	C	membrane part
GO:0044428	C	nuclear part
GO:0044432	C	endoplasmic reticulum part
GO:0044444	C	cytoplasmic part
GO:0044446	C	intracellular organelle part
GO:0044464	C	cell part
GO:0044877	F	macromolecular complex binding
GO:0050708	P	regulation of protein secretion
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051046	P	regulation of secretion
GO:0051049	P	regulation of transport
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051223	P	regulation of protein transport
GO:0051246	P	regulation of protein metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0070013	C	intracellular organelle lumen
GO:0070201	P	regulation of establishment of protein localization
GO:0071944	C	cell periphery
GO:0080090	P	regulation of primary metabolic process
GO:0090087	P	regulation of peptide transport
GO:0098827	C	endoplasmic reticulum subcompartment
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1903530	P	regulation of secretion by cell
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network