result

Gene information

Detail information of g195595


Location
GeneChrStartEndStrand
g195595Scaffold_50374:HRSCAF_433460185994186884-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_008221602.13.5e-45PREDICTED: uncharacterized protein LOC103321564, partial
SwissprotQ84X53.29.7e-24Protein SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10
trEMBLA0A314ZJP12.2e-44Transcription termination factor MTEF1 chloroplastic

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT2G03050.147.316e-57 217EMB93;SOLDAT10Mitochondrial transcription termination factor family protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag195595.t1
Allium fistulosumAfisC6G04761
Allium sativumAsa8G02534.1
Arabidopsis thalianaAT2G03050.1
Oryza sativa

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF02536.11mTERFFamily6216034.11.3e-08
PF02536.11mTERFFamily17328181.74e-23

Gene Ontology
AccessionOntologyName
GO:0000003Preproduction
GO:0042254Pribosome biogenesis
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0008152Pmetabolic process
GO:0003006Pdevelopmental process involved in reproduction
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003723FRNA binding
GO:0003727Fsingle-stranded RNA binding
GO:0005488Fbinding
GO:0005623Ccell
GO:0005737Ccytoplasm
GO:0043231Cintracellular membrane-bounded organelle
GO:0006139Pnucleobase-containing compound metabolic process
GO:0006396PRNA processing
GO:0006725Pcellular aromatic compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0006996Porganelle organization
GO:0007275Pmulticellular organism development
GO:0009790Pembryo development
GO:0008150Pbiological_process
GO:0008380PRNA splicing
GO:0009507Cchloroplast
GO:0009536Cplastid
GO:0009657Pplastid organization
GO:0009658Pchloroplast organization
GO:0009791Ppost-embryonic development
GO:0009793Pembryo development ending in seed dormancy
GO:0009987Pcellular process
GO:0010154Pfruit development
GO:0010467Pgene expression
GO:0022607Pcellular component assembly
GO:0016043Pcellular component organization
GO:0016070PRNA metabolic process
GO:0019843FrRNA binding
GO:0022414Preproductive process
GO:0022613Pribonucleoprotein complex biogenesis
GO:0022618Pribonucleoprotein complex assembly
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0034622Pcellular macromolecular complex assembly
GO:0034641Pcellular nitrogen compound metabolic process
GO:0042255Pribosome assembly
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043933Pmacromolecular complex subunit organization
GO:0044085Pcellular component biogenesis
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044424Cintracellular part
GO:0044444Ccytoplasmic part
GO:0044464Ccell part
GO:0046483Pheterocycle metabolic process
GO:0048316Pseed development
GO:0048608Preproductive structure development
GO:0048731Psystem development
GO:0048856Panatomical structure development
GO:0061458Preproductive system development
GO:0065003Pmacromolecular complex assembly
GO:0070925Porganelle assembly
GO:0071704Porganic substance metabolic process
GO:0071826Pribonucleoprotein complex subunit organization
GO:0071840Pcellular component organization or biogenesis
GO:0090304Pnucleic acid metabolic process
GO:0097159Forganic cyclic compound binding
GO:1901360Porganic cyclic compound metabolic process
GO:1901363Fheterocyclic compound binding

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K15032MTERFD; mTERF domain-containing protein, mitochondrialEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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