result

Gene information

Detail information of g196417

Location

Gene	Chr	Start	End	Strand
g196417	Scaffold_50494:HRSCAF_433580	19593	22256	+

Sequences

CDS

>g196417.t1
ATGTATGTTTTATTCATTTTCATGTTGCTACTTCATTCATCCTTATCAGACACCTCAGACTTCGCCGCACCCTACAAACCCAGAGAGCACATCCTCCTGAACTGCGGCGTTTCTGGCTCTATTGAATCCTCCCAAGGCCTCGAATGGTCAGGGGACGTGGGCTCTACTTACAACCCGGCCCTCACTTCTTTGGGTTTTTCCGCCTCCTACATGGACTCGGGAACCCCTACAGTCCCATACCAGACGGCCCGCATCTTCTCCACTCCCTCTACTTACACCTTCCCCCTTGACCCTGGCCGTAAGTTCCTAAGACTCCACTTCTACCCTTCCAACTACACCAATCTCCACGCGTCCGACGCTAGGTTTTCCGTAACCGCCGGCCCCACCACCCTTCTCAGCAACTTCAGTGCCGACCAAACTGCAAAGGCATTAAACTATGCCTTGTTGGTGTTCGAATACTCCTTGAACGTGCCTGCTTCCAATCTCTCTTTGACTTTTGTGCCGTCCAAGGATAAAGATTACCCTAATTCCTACGCTTTTGTTAATGGAATCGAGATCGTGTCCCTTCCGGATATGTTTCCGAAAGATGCATACCTTGTGAACGGAGCTGCAACGTATCCGTACACGATCGACCCCGATTCCTCCCTTCAGACCGTATACAGACTCAACGTGGGAGGAGCGGCGATTTCTGCGAATGAAGATTCGGGTTTGTTCCGAGCCTGGTCTGTTGATTCCAACTACCTTTACGGAGCAGCTTTTGGAGTTACGTACCTCAAAGACCGGAACGTAACAATCGAGTATTCAGCAAATCTGCGTGCCTATATTGCGCCAGAAAAAGTTTACGCAACCGCTAGATCAATGGGTCCTACCGTCTCGATAAATCGAAACTATAACTTGACCTGGATTCTTTCAGTGGATGCAGGCTTCTATTACATGGTCAGGCTTCATTTTTGCGAAATGGCATATCCGATAACAATGCCTAACATGAGAGTTTTTACGATTTATATCAACAACCAAACTGCTAAGATAGACGCCGATGTCATTGTATGGACCAAAGGGATCGGTGTTCCTTACTATGTCGATTATGTGGTTCCTACGATTGGCACCGGTATGGTCGATTTGTGGGTCGCCTTGCATCCGAACGAGAGATCAAAACCTCAGTATGTTGATGCATTGTTGAATGGTCTTGAAGTGTTCAAACTCGAAGACACAAGCAATCACAGCCTAGCTGGCATGAATCCCGATTATTTGCCCGAGTCAAACGTCGACTATGACAGAGTGTTCAACAATCCAAAACGGAAATCTAAAAGCGCTATAGGCGGAATCGTTGGCGGCGCACTTGGCTTTATCGTCGTCCTAGTAAGTTTGTTGATATTCGTTGCTTGTAAAAAGAAAAAGCAAGTCAAAGCAAAGGGTGCTCGATCGACCGACTGGCTACCGATATCTTTGTACGGCAACTCGAACTCTGGAAAAACCAACACAACCGGAAGCGTCGGGTCTTCCGTTCCGTCCAGTTTATCCCGGTACTTCTCCTTTGCAGAGATCGAGGATGCAACCAACGGATTCGACGAAGCATTGCTTCTTGGAGTAGGAGGTTTCGGAAAAGTGTACGAAGGTCAAATTGATAACGGGTCGGTAAAGGTTGCGATAAAGAGAGGGAACCCGATGTCAGACCAAGGCGCTCATGAGTTCCGCACCGAGATCGAGATGCTCTCCAAGCTCCGGCACCGCCATTTGGTTTCCCTCATCGGGTTCTGTGAGGAGAACGATGAGATGATATTGGTGTACGACTACATGGCCCATGGCACTCTGCGCGAGCATCTGTACAAAACTAAGAACAAGCCCCTGTCATGGAGGCAGCGCTTGGAGATTTGCATAGGCGCTGCCCGTGGGTTGCACTACCTTCACACTGGGGCCAAGCACACGATTATTCACCGTGATGTGAAGACGACCAATATCTTATTGGATGAGAAGTGGGTTGCGAAGGTTTCGGATTTCGGGCTATCAAAAACAGGTCCATTGCTCGACAACACGCATGTCAGTACGGTTGTGAAAGGGAGTTTCGGGTACTTGGACCCGGAGTATTTTCTGCGTCAGCAGTTGACTGATAAATCGGATGTGTACTCTTTTGGGGTTGTTCTATTTGAGATTTTGTGCGCCCGACCGGCATTGAACCCTGGTCTATCAAAAGAGCAGGTAAGTCTTGTTGATTGGGCGCGGCATTGTCTGAAGAAAGGCACGATCGATCAGCTGGTGGACCCATACCTGCATGGGAAGATATCTTCTCAGTGTCTGAAGAAGTTTACAGAGATGGCCGAAAAATGTGTATTGGAGCAGGGGATCGAGAGACCATCTATGGGGGATGTGCTTTGGAATCTGGAGTTTGCGCTTCAGCTGCAGGAGAGCGCGGAAGAAAGTGGAGGATTTGGGGACAGTGGGGATGAGGCTGCTCCGTTGATGAAGGGAGGGAAGAAAGATCTGAAAAATGAGATGTTATTGAAATCGGATTCGATTACTACCACCACCACGAGTATGACTATGACTACTAGCAGTAATGCTTCAAGCAGTAGCACTGATAGTCGGAGTTTCAATAGTGGGAACTTAGATGAATTGACTTCTAGCGCCGTTGTGTTTTCTCAGATCATGAATCCCGAAGGGAGATAA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	OAY65008.1	0.0e+00	Receptor-like protein kinase FERONIA, partial
Swissprot	Q9SCZ4.1	5.6e-285	Protein SIRENE
trEMBL	A0A199UJV7	0.0e+00	Receptor-like protein kinase FERONIA (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G51550.1	59.14	0.0	1003	FER	Malectin/receptor-like protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	bit score
g196417	AT3G51550.1	886	325	13	22	887	27	895	59.14	1003
g196417	AT5G28680.1	906	391	24	2	887	11	858	48.23	772
g196417	AT3G04690.1	877	380	23	29	887	27	850	48.57	769

Ortholog group

Species	Genes
Allium cepa	g196417.t1; g42497.t1; g539587.t1
Allium fistulosum	AfisC1G06412; AfisC2G03097; AfisC3G08832
Allium sativum	Asa2G07301.1; Asa2G07302.1; Asa5G02607.1; Asa7G00926.1; Asa7G03085.1
Arabidopsis thaliana	AT3G04690.1; AT3G51550.1; AT5G28680.1
Oryza sativa	LOC_Os01g56330.1; LOC_Os03g21540.1; LOC_Os05g20150.1; LOC_Os05g25350.1; LOC_Os05g25370.1; LOC_Os05g25450.1; LOC_Os05g25450.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF12819.4	Malectin_like	Domain	33	400	122.0	2.8e-35
PF07714.14	Pkinase_Tyr	Domain	528	790	167.0	4.3e-49

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005886	C	plasma membrane
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0001558	P	regulation of cell growth
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0006952	P	defense response
GO:0050832	P	defense response to fungus
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0005618	C	cell wall
GO:0005623	C	cell
GO:0005911	C	cell-cell junction
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0006950	P	response to stress
GO:0007275	P	multicellular organism development
GO:0008150	P	biological_process
GO:0009506	C	plasmodesma
GO:0009605	P	response to external stimulus
GO:0009607	P	response to biotic stimulus
GO:0051707	P	response to other organism
GO:0009620	P	response to fungus
GO:0009719	P	response to endogenous stimulus
GO:0009723	P	response to ethylene
GO:0009725	P	response to hormone
GO:0009741	P	response to brassinosteroid
GO:0009787	P	regulation of abscisic acid-activated signaling pathway
GO:0009788	P	negative regulation of abscisic acid-activated signaling pathway
GO:0009791	P	post-embryonic development
GO:0009856	P	pollination
GO:0009966	P	regulation of signal transduction
GO:0009968	P	negative regulation of signal transduction
GO:0009987	P	cellular process
GO:0010033	P	response to organic substance
GO:0010118	P	stomatal movement
GO:0010483	P	pollen tube reception
GO:0010646	P	regulation of cell communication
GO:0010648	P	negative regulation of cell communication
GO:0014070	P	response to organic cyclic compound
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019538	P	protein metabolic process
GO:0022414	P	reproductive process
GO:0022622	P	root system development
GO:0023051	P	regulation of signaling
GO:0023057	P	negative regulation of signaling
GO:0030054	C	cell junction
GO:0030308	P	negative regulation of cell growth
GO:0030312	C	external encapsulating structure
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0033993	P	response to lipid
GO:0036211	P	protein modification process
GO:0040008	P	regulation of growth
GO:0042221	P	response to chemical
GO:0043170	P	macromolecule metabolic process
GO:0043207	P	response to external biotic stimulus
GO:0043412	P	macromolecule modification
GO:0043680	C	filiform apparatus
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044426	C	cell wall part
GO:0044462	C	external encapsulating structure part
GO:0044464	C	cell part
GO:0044703	P	multi-organism reproductive process
GO:0044706	P	multi-multicellular organism process
GO:0045926	P	negative regulation of growth
GO:0046777	P	protein autophosphorylation
GO:0048364	P	root development
GO:0048519	P	negative regulation of biological process
GO:0048523	P	negative regulation of cellular process
GO:0048583	P	regulation of response to stimulus
GO:0048585	P	negative regulation of response to stimulus
GO:0048731	P	system development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051128	P	regulation of cellular component organization
GO:0051703	P	intraspecies interaction between organisms
GO:0051704	P	multi-organism process
GO:0055044	C	symplast
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:0098542	P	defense response to other organism
GO:0099402	P	plant organ development
GO:1901419	P	regulation of response to alcohol
GO:1901420	P	negative regulation of response to alcohol
GO:1901564	P	organonitrogen compound metabolic process
GO:1901700	P	response to oxygen-containing compound
GO:0140096
GO:1905957
GO:1905958

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network