Detail information of g198950


Location
GeneChrStartEndStrand
g198950Scaffold_50769:HRSCAF_4338553844846802+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_015877124.12.1e-132zinc finger CCCH domain-containing protein 11 isoform X2
SwissprotQ0JHZ2.21.1e-109Zinc finger CCCH domain-containing protein 11
trEMBLA0A6P3ZGE51.5e-132zinc finger CCCH domain-containing protein 11 isoform X2

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT2G20280.172.532e-126 448Zinc finger C-x8-C-x5-C-x3-H type family protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag198950.t1
Allium fistulosumAfisC1G06478; AfisC3G02356; AfisC3G07983; AfisC5G03688; AfisC6G01179; AfisC6G03774
Allium sativumAsa7G03026.1; Asa7G03027.1
Arabidopsis thalianaAT2G20280.1
Oryza sativaLOC_Os01g61830.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00642.21zf-CCCHFamily9011323.24.2e-05
PF16543.2DFRP_CDomain21529971.74.7e-20

Gene Ontology
AccessionOntologyName
---

KEGG pathway
KONameEnzyme IDPathwayPathway ID
-----

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.