result

Gene information

Detail information of g199715

Location

Gene	Chr	Start	End	Strand
g199715	Scaffold_50905:HRSCAF_433991	177075	177542	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020257205.1	5.4e-29	zinc finger protein 7-like
Swissprot	Q39266.1	1.7e-19	Zinc finger protein 7
trEMBL	A0A5P1FAG4	3.9e-29	C2H2-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G24625.1	37.34	7e-22	99.8	ZFP7	zinc finger protein 7

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g199715	AT1G24625.1	158	82	6	2	149	24	174	37.34	7e-22	99.8
g199715	AT1G66140.1	136	43	5	40	140	83	218	42.65	5e-20	93.6
g199715	AT5G25160.1	102	40	3	12	99	33	132	45.10	5e-15	76.6

Ortholog group

Species	Genes
Allium cepa	g199715.t1; g2769.t1
Allium fistulosum	AfisC3G00825; AfisC3G05724
Allium sativum	Asa2G00742.1; Asa2G04705.1
Arabidopsis thaliana	AT1G24625.1; AT1G66140.1
Oryza sativa	LOC_Os03g13600.1; LOC_Os03g13600.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13912.3	zf-C2H2_6	Domain	41	66	24.7	1.5e-05

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0001067	F	regulatory region nucleic acid binding
GO:0006790	P	sulfur compound metabolic process
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006082	P	organic acid metabolic process
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006807	P	nitrogen compound metabolic process
GO:0046983	F	protein dimerization activity
GO:0008150	P	biological_process
GO:0009787	P	regulation of abscisic acid-activated signaling pathway
GO:0009788	P	negative regulation of abscisic acid-activated signaling pathway
GO:0009889	P	regulation of biosynthetic process
GO:0009966	P	regulation of signal transduction
GO:0009968	P	negative regulation of signal transduction
GO:0009987	P	cellular process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010646	P	regulation of cell communication
GO:0010648	P	negative regulation of cell communication
GO:0044212	F	transcription regulatory region DNA binding
GO:0016143	P	S-glycoside metabolic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0019748	P	secondary metabolic process
GO:0019757	P	glycosinolate metabolic process
GO:0019760	P	glucosinolate metabolic process
GO:0023051	P	regulation of signaling
GO:0023057	P	negative regulation of signaling
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043436	P	oxoacid metabolic process
GO:0043565	F	sequence-specific DNA binding
GO:0044237	P	cellular metabolic process
GO:0044281	P	small molecule metabolic process
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0046982	F	protein heterodimerization activity
GO:0048519	P	negative regulation of biological process
GO:0048523	P	negative regulation of cellular process
GO:0048583	P	regulation of response to stimulus
GO:0048585	P	negative regulation of response to stimulus
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901135	P	carbohydrate derivative metabolic process
GO:1901363	F	heterocyclic compound binding
GO:1901419	P	regulation of response to alcohol
GO:1901420	P	negative regulation of response to alcohol
GO:1901564	P	organonitrogen compound metabolic process
GO:1901657	P	glycosyl compound metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110
GO:1905957
GO:1905958

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network